BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0282.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum ser...   436   e-123

>gi|300312585|ref|YP_003776677.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  436 bits (1121), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/331 (81%), Positives = 287/331 (86%), Gaps = 8/331 (2%)

Query: 1   MGLFSFFRKNKQDSSADQGSFRSRSEEQSSVIRSRSSRSAAGGAAGSARSSRSKAGKDAA 60
           MGLFSFFRKNKQD+++DQG+FRSRSEEQSSVIRSRSSRS A   +G A  +R+KAGKD  
Sbjct: 1   MGLFSFFRKNKQDAASDQGAFRSRSEEQSSVIRSRSSRSTAN-TSGRATGTRAKAGKDGG 59

Query: 61  ADPLLPEKKRARRRLIGAVALTLAVVIVLPMILDSEPKPLNDDIAIQIPSKDQPASGVAQ 120
           ADPLLPEKKRARRRLIGAVAL LAVVIVLPMILDSEPKPLNDDIAIQIPSKDQPASG AQ
Sbjct: 60  ADPLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLNDDIAIQIPSKDQPASGAAQ 119

Query: 121 PGGRDAKQASLDQKEEIVEPSSI----APEPAVAATPAAPAQPVTPPVAAVAPKVVEKPA 176
           P   DAKQASLDQKEEIVEP+SI    A  PA AAT  A  QP TPPVAAVAPKV+EKP 
Sbjct: 120 PAAGDAKQASLDQKEEIVEPASIAPEPATTPAPAATAPAATQPATPPVAAVAPKVIEKPV 179

Query: 177 DKPVEKHTEKPAPKAEEKKPAVAEHKEEPKKEAAKPKAPAHTADDDAARALAILEGKPAS 236
           +KP EK  +KP PK EEKKP V EH+EEPKKEAAKPKA A +A DD+ARALAILEGK  +
Sbjct: 180 EKPAEKPADKPTPKIEEKKPIVVEHREEPKKEAAKPKASAPSAHDDSARALAILEGKSGA 239

Query: 237 AAAAPAPAEKKPAAAGGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIATEAGERTR 296
           AAA    AEKKPAA+GGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIAT+AG+RTR
Sbjct: 240 AAAP---AEKKPAASGGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIATQAGDRTR 296

Query: 297 IRVGPFASREEAERMGGRIKKLGLNATIVPA 327
           IRVGPF SREEAERMGGRIKKLGLNATIVPA
Sbjct: 297 IRVGPFGSREEAERMGGRIKKLGLNATIVPA 327


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.124    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,103
Number of extensions: 13859
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 131 (55.1 bits)