BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0273.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembl...   284   5e-78

>gi|300312592|ref|YP_003776684.1| transmembrane Tfp pilus assembly
           FimV protein [Herbaspirillum seropedicae SmR1]
          Length = 896

 Score =  284 bits (726), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 179/206 (86%), Gaps = 2/206 (0%)

Query: 4   FNRVALNLHALSGGLNEAWVKAAALGLTIDPTNPLYGGMPAEPEPEPEEAAGMEFDLSDF 63
           FNRVALNLHALSGGLNE WVKAAALGL IDPTNPLYGG P        E AGMEFDL DF
Sbjct: 692 FNRVALNLHALSGGLNETWVKAAALGLEIDPTNPLYGGQPEPEPEPEPEEAGMEFDLDDF 751

Query: 64  KAAEVQPEATPAPAAAMDLGKDIDFDLDLENGAKPDADEPILPASSGAASASMLLDSLDD 123
           K+AE++ +ATPAPA  MDLGKDIDFDLDLENGAKPDADEP+LPAS+ AASAS LLDSLDD
Sbjct: 752 KSAEIRADATPAPAP-MDLGKDIDFDLDLENGAKPDADEPLLPASTAAASASTLLDSLDD 810

Query: 124 APAATTLADLDLSLPEDTPAP-SAANILEEDEESAFEQEMTTKLDLAAAYEEIGDKEGAR 182
            P A++L+DLDLSLP++  AP SA N+LEEDEESAFE EMTTKLDLAAAYEEIGDKEGAR
Sbjct: 811 QPQASSLSDLDLSLPDEASAPPSATNLLEEDEESAFEAEMTTKLDLAAAYEEIGDKEGAR 870

Query: 183 ELLEEVMRGGNDAQVARAKSMIAALG 208
           ELLEEVMRGGNDAQVARAK M+A LG
Sbjct: 871 ELLEEVMRGGNDAQVARAKQMMAGLG 896


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 519,377
Number of extensions: 15967
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 128 (53.9 bits)