BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0266.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...   520   e-149
gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...    97   2e-21
gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...    69   4e-13

>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score =  520 bits (1339), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/273 (94%), Positives = 269/273 (98%)

Query: 1   MVLKPIVKNSLLAAALVGLVACETVQTTQGGAVGIDRKQQMLVSSAEMEASSAKEYAQVL 60
           MVLKPI+KNSLLA AL GLVACETVQTTQGGAVGIDRKQQMLVSSAEM+A+S+KEYAQVL
Sbjct: 1   MVLKPIIKNSLLALALAGLVACETVQTTQGGAVGIDRKQQMLVSSAEMDAASSKEYAQVL 60

Query: 61  AEAKSKGLLNRNAAQAQRVRTIANRLIPQTGVFRPDALKWNWEVNVLTSDETNAWCMPGG 120
           AEAKSKGLLNRNAAQ QRVR IA+RLIPQTGVFRPDALKWNWEVNVL+SDETNAWCMPGG
Sbjct: 61  AEAKSKGLLNRNAAQVQRVRNIASRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGG 120

Query: 121 KIAVYTGLIDKLKITDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD 180
           KIAVYTGLI+KLKI+DDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD
Sbjct: 121 KIAVYTGLIEKLKISDDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGD 180

Query: 181 VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGDEPM 240
           VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGG+EPM
Sbjct: 181 VGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEEPM 240

Query: 241 KFMSTHPSSSERIADLTVYAQRVEPLYQQTRKR 273
           KFMSTHPSSSERIADLTVYAQRVEPLYQQTR+R
Sbjct: 241 KFMSTHPSSSERIADLTVYAQRVEPLYQQTRRR 273


>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 22/194 (11%)

Query: 100 WNWEVNVLTSDETNAWCMPGGKIAVYTGLIDKLKITDDELAAVMGHEIAHALREHARERA 159
           ++++  ++     NA+ +PGG I V +GL+   + ++ ELA VM HEI H  + H     
Sbjct: 145 FDFQFFMVRDPMLNAFALPGGFIGVNSGLVLAAQ-SESELAGVMSHEIGHVAQRHIARML 203

Query: 160 SQQVVANSAISIGAALLG-LGDVGKQGGQYLYMGLMG---------LPNSRANETEADRI 209
            QQ   NS I + A +LG L  V K GG      +MG         L  SR  E EADRI
Sbjct: 204 GQQK-QNSMIQLAAIVLGALAGVSKAGGDAAMATMMGGTGLAVQRQLNFSRDAEREADRI 262

Query: 210 GVELAARGGYDPKAAVTLWQKMASLG---GDEPMKFMSTHPSSSERIADLTV------YA 260
           G+++   GG+DP   VT + ++ +      D    ++ THP ++ERIAD+        Y 
Sbjct: 263 GLQIMRDGGFDPSGMVTFFGRLQAASRNYSDAVPPYLMTHPLTTERIADIEARIRDQRYK 322

Query: 261 QRVE-PLYQQTRKR 273
           QRV+ P +Q  R R
Sbjct: 323 QRVDNPEFQLVRAR 336


>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 8/145 (5%)

Query: 113 NAWCMPGGKIAVYTGLIDKLKITDDELAAVMGHEIAHALREHARERASQQVVANSAISIG 172
           NA+ +P G+I V T  I +L   DD L  V+ HE+ H  R H   R    ++ +SAI+  
Sbjct: 188 NAFALPSGQIVV-TDEIVRLLDDDDALMGVLAHELGHVHRRHLMRR----LIQSSAIAAT 242

Query: 173 AALLGLGDVGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMA 232
           A +L  GDV       +   L+ L  SR  E EAD   + +    G   +    +++K+ 
Sbjct: 243 ATVL-FGDVSAVLAN-IPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE 300

Query: 233 SLGGDEPMK-FMSTHPSSSERIADL 256
           S G D+P   ++S+HP++ ERIA +
Sbjct: 301 SAGKDDPASPYLSSHPANDERIAHI 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 641,660
Number of extensions: 21197
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)