BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0264.p (629 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312599|ref|YP_003776691.1| major facilitator superfamily p... 1219 0.0 gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate ... 65 1e-11 gi|300311697|ref|YP_003775789.1| acyltransferase family protein ... 56 7e-09 >gi|300312599|ref|YP_003776691.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 629 Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 600/629 (95%), Positives = 618/629 (98%) Query: 1 MQKNSQFTLFSQRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTDMDPGLLNNLIP 60 MQKNSQFTLF+QRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTD+DPGLLNNLIP Sbjct: 1 MQKNSQFTLFTQRRFAPFFWTQFLGALNDNVFKTALLTILTYDALSWTDLDPGLLNNLIP 60 Query: 61 GLFILPFFLFSATSGQLSDKLEKGRVARFVKLLEIAIMCVAAYGWMTHHLWLLIAAVIGM 120 GLFILPFFLFSATSGQL+DKLEKGRVARFVKLLEIAIM +AAYGWMTHHLWLL+AAVIGM Sbjct: 61 GLFILPFFLFSATSGQLADKLEKGRVARFVKLLEIAIMGIAAYGWMTHHLWLLVAAVIGM 120 Query: 121 GVHSTLFGPVKYAYLPQQLKREELVGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV 180 GVHSTLFGPVKYAYLPQQL+REEL+GGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV Sbjct: 121 GVHSTLFGPVKYAYLPQQLRREELIGGNGLIEMGTFVGILLGEILGAVLVVHKPWGLHLV 180 Query: 181 AGITIGIAVLGWLASLRIPLSPAPVPDLKVNWNPFTETVRNLGYSRRNRPVFLSLLGNSW 240 AG+TIGIAVLGWLASLRIPLSPAPVP+LKVNWNPFTETVRNL YSRRNRPVFLSLLGNSW Sbjct: 181 AGMTIGIAVLGWLASLRIPLSPAPVPELKVNWNPFTETVRNLAYSRRNRPVFLSLLGNSW 240 Query: 241 FWFYGAIMLAQFPVYAKNYLHGDHSVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF 300 FWFYGAIMLAQFPVYAKNYLHGDHSVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF Sbjct: 241 FWFYGAIMLAQFPVYAKNYLHGDHSVFVLLLAVFSVGIGAGSLLCERLSGHKVEIGLVPF 300 Query: 301 GSIGLSVFGLELYFASQAYVTPSAMLDLGGFLAQGGSWRILFDCLGIGLFGGLYIVPLFA 360 GSIGLSVFGLELYFASQAYVTP+AMLDLGGFLAQGGSWRIL DCLGIG+FGGLYIVPLFA Sbjct: 301 GSIGLSVFGLELYFASQAYVTPTAMLDLGGFLAQGGSWRILIDCLGIGVFGGLYIVPLFA 360 Query: 361 LIQTRCDPAHVSRTIAGMNIMNALFMVVSAVVAMVLLKAGLTIPQIFLATAIMNGVVAVY 420 LIQTRCDPAHVSRTIAGMNIMNALFMVVSA+VAMVLLKAGL+IPQIFLATAIMNGVVA Y Sbjct: 361 LIQTRCDPAHVSRTIAGMNIMNALFMVVSALVAMVLLKAGLSIPQIFLATAIMNGVVAAY 420 Query: 421 IFSLVPEFLIRFLAWILIHTFYRVRIINGQAIPDEGPAVLVCNHVSYVDAIAIMAASPRP 480 IFSLVPEFLIRFLAWILIHTFYRVRIINGQAIP++GPAVLVCNHVSYVDAIAIMAASPRP Sbjct: 421 IFSLVPEFLIRFLAWILIHTFYRVRIINGQAIPEQGPAVLVCNHVSYVDAIAIMAASPRP 480 Query: 481 VRFVMDHQIFKIPVMSWLFRNVRAIPIAPVKEDPWLTEKAFVDIAQALHEGELVCIFPEG 540 VRFVMDHQIF+IPVMSWLFRNVRAIPIAPVKEDPWLTEKAFVDIAQALHEGELVCIFPEG Sbjct: 481 VRFVMDHQIFRIPVMSWLFRNVRAIPIAPVKEDPWLTEKAFVDIAQALHEGELVCIFPEG 540 Query: 541 KLTRDGELNPFKGGVQKIIDRSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSRLE 600 KLTRDGELNPFKGGVQKII RSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSRLE Sbjct: 541 KLTRDGELNPFKGGVQKIIARSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSRLE 600 Query: 601 LAVGEPIAPDAVSPEGLQEQVRALRGDWK 629 LAVGE I P+ VSPE LQE+VR LRG WK Sbjct: 601 LAVGEAIPPEQVSPELLQEKVRELRGQWK 629 >gi|300310049|ref|YP_003774141.1| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Herbaspirillum seropedicae SmR1] Length = 267 Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 28/187 (14%) Query: 443 RVRIINGQAIPDEGPAVLVCNHVSYVDAIAIMAASPRPVRFVMDHQIFKIPVMSWLFRNV 502 R I + +PD P +L+ H S + I + PRP+ FV ++ +P W + Sbjct: 65 RYEIRGAENLPD-APVILLSKHQSAWETIFYVINMPRPLVFVFKKELTYVPFFGWGIALL 123 Query: 503 RAIPIAPVKEDPWLTEKAFVDI----AQALHEGELVCIFPEGKLTRDGELNPFKGGVQKI 558 R IPI K AF + + L +G+ + +FPEG T G +K G ++ Sbjct: 124 RMIPIDRKK-----GRDAFAQVLEHGTRRLRDGQWIMMFPEGTRTTVGSQGKYKAGGSRL 178 Query: 559 IDRSPVPVLPMALRGLWGSLFSRDPSNPVARTFKRGLFSR----LELAVGEPIAPDAVSP 614 + V+P+A+ + + +G F + + +++G+PI+P+ ++P Sbjct: 179 AVETNTLVVPIAMNS--------------GQCWPKGSFIKKPGLITVSIGKPISPEGLNP 224 Query: 615 EGLQEQV 621 + L E+V Sbjct: 225 QELNERV 231 >gi|300311697|ref|YP_003775789.1| acyltransferase family protein [Herbaspirillum seropedicae SmR1] Length = 932 Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 14/160 (8%) Query: 427 EFLIRFLAWILIHTFYRVRIINGQAIPDEGPAVLVCNHVSYVDAIAIMAASPRPVRFVMD 486 + L+R LA +V I +P GP VLV NH SY+D++ ++AA P + + Sbjct: 737 QLLVRLLA-------LQVSIAGTDHLP-SGPHVLVVNHSSYLDSLILLAALPPVPGYCLA 788 Query: 487 HQIFKIPVMSWLFRN-VRAIPIAPVKEDPWLTEKAFVD-IAQALHEGELVCIFPEGKLTR 544 + + W+ R +R + + V + VD + +AL GE + +FPEG TR Sbjct: 789 AK--RELEAHWIIRRFLRGLGVLFVDRSDISQSRTEVDSMVEALKRGENILVFPEGTFTR 846 Query: 545 DGELNPFKGGVQKIIDRSPVPVLPMALRGLWGSLFSRDPS 584 + LN F G ++ VP++ LRG +L RD S Sbjct: 847 NAGLNAFHFGAFMAASKANVPLVVAGLRGTRLAL--RDES 884 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.144 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,011,152 Number of extensions: 88833 Number of successful extensions: 389 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 388 Number of HSP's successfully gapped: 5 Length of query: 629 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 538 Effective length of database: 1,188,985 Effective search space: 639673930 Effective search space used: 639673930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)