BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0261.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...   738   0.0  

>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/452 (88%), Positives = 413/452 (91%), Gaps = 16/452 (3%)

Query: 1   LRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLEAYFVENL 60
           LRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLEAYFVENL
Sbjct: 23  LRFAGRRLREDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLEAYFVENL 82

Query: 61  MPKGVANTILGYLNQFAAKSARISAVGGVLLILTSVLTMSTIESVFNQIWRVKKSRPLVQ 120
           MPKGVANTILGYLNQFAAKSARISAVGGV+LILTSVLTMSTIESVFNQIWRVKKSRPLVQ
Sbjct: 83  MPKGVANTILGYLNQFAAKSARISAVGGVVLILTSVLTMSTIESVFNQIWRVKKSRPLVQ 142

Query: 121 RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFYTLVSLMLSTLAYTLL 180
           RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFYTLVSLM STLAYTLL
Sbjct: 143 RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASFYTLVSLMFSTLAYTLL 202

Query: 181 YSTVPNQTVDWRDAAAGGSIPKVEXLAGVGLEIAKRLFAAYILQFPTYTMVYGTVAVLPI 240
           YSTVPNQTVDWRDA AGG       LAG+GLEIAKRLFA YIL+FPTYTMVYGTVAVLPI
Sbjct: 203 YSTVPNQTVDWRDALAGG------LLAGIGLEIAKRLFAVYILKFPTYTMVYGTVAVLPI 256

Query: 241 FLVWIYMMWMITLFGALLTAALPVVRYERWWHVPSPGAEFIDAVKVLKFLHAARVGVESA 300
           FLVWIYMMWMITLFGALLTAALPVVRYERWWHV SPGAEFIDA+KVL+FLHAARVGVESA
Sbjct: 257 FLVWIYMMWMITLFGALLTAALPVVRYERWWHVASPGAEFIDAIKVLRFLHAARVGVESA 316

Query: 301 VVSMEEVRRATRLGLGELQQLLARMSEEGWVASVKPESGSRSRRGWNRRITDDMDRWTLV 360
           VVSM+EVRRATRLGLGELQQLLARMSEEGWVASVKP  G+  R  WNRRITDDMDRWTLV
Sbjct: 317 VVSMDEVRRATRLGLGELQQLLARMSEEGWVASVKP--GNSRRSSWNRRITDDMDRWTLV 374

Query: 361 ANPSTIQLARVYRLFVFDPAVLAQAGEEEALVARVEDAINAVLAQSLEQYCQAG---RVA 417
           ANPSTIQLARVYRLFVFDPAVLAQAGEEE LV RVE AI+AVLAQSLE YC A    R A
Sbjct: 375 ANPSTIQLARVYRLFVFDPAVLAQAGEEEGLVHRVEGAIDAVLAQSLEDYCSADAARRAA 434

Query: 418 EEE-----VAATVAAMPHAAVPLEARRRLWER 444
            EE      A+  AA P+AAVPL  RRR+WER
Sbjct: 435 LEEQAMEAAASAPAATPYAAVPLAERRRIWER 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,199,837
Number of extensions: 44131
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)