BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0260.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312603|ref|YP_003776695.1| TRP repressor binding protein [...   404   e-114
gi|300312868|ref|YP_003776960.1| tryptophan repressor binding pr...    57   2e-09

>gi|300312603|ref|YP_003776695.1| TRP repressor binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  404 bits (1039), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/214 (91%), Positives = 205/214 (95%), Gaps = 1/214 (0%)

Query: 1   MMTSSTA-TSVQTSSNATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTV 59
           M TS+T+ T+V  +SNATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTV
Sbjct: 1   MTTSATSSTAVNAASNATILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTV 60

Query: 60  TEAVEPDVPSSGAPYVEASDLAECDGLALGSPTRFGNMAAAMKYFWDGTSPQWLSGTLAG 119
            EAVEPDVP+SGAPYVEASDL ECDGLALGSPTRFGNMAAAMKYFWDGT+PQWLSG L G
Sbjct: 61  AEAVEPDVPASGAPYVEASDLEECDGLALGSPTRFGNMAAAMKYFWDGTAPQWLSGALTG 120

Query: 120 KPACVFTSTGSLHGGQESTLLSMMLPLLHHGMLIVGLPYSHPELMNTSSGGTPYGASHWA 179
           KPACVFTSTGSLHGGQE+TLLSMM+PLLHHGML+VGLPYSHPELMNT SGGTPYGASHWA
Sbjct: 121 KPACVFTSTGSLHGGQEATLLSMMIPLLHHGMLLVGLPYSHPELMNTHSGGTPYGASHWA 180

Query: 180 GVNGNQPLSDDSRTLAIALGKRLAENAIKLRRPS 213
           GVNGNQPLSDDSRTLAIALGKRLAENAIKLRRPS
Sbjct: 181 GVNGNQPLSDDSRTLAIALGKRLAENAIKLRRPS 214


>gi|300312868|ref|YP_003776960.1| tryptophan repressor binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 191

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 13/138 (9%)

Query: 18  ILVLYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTVTEAVEPDVPSSGAPYVEA 77
           + ++Y+S +G T+K AE +  G   V G +  L  + A  T+T+              + 
Sbjct: 4   VAIVYHSGYGHTKKQAEAVQAGAAGVAGANVELIAISAEGTITDE-------------QW 50

Query: 78  SDLAECDGLALGSPTRFGNMAAAMKYFWDGTSPQWLSGTLAGKPACVFTSTGSLHGGQES 137
           + L   D +  GSPT  G ++   K F D +S  W S     K    FT++ +++G + S
Sbjct: 51  ASLDAADAIIFGSPTYMGTVSWQFKKFADASSKHWFSQKWKDKVGAAFTNSATMNGDKLS 110

Query: 138 TLLSMMLPLLHHGMLIVG 155
           TL  +    + H M+ VG
Sbjct: 111 TLHYLFTLGMQHSMIWVG 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 694,124
Number of extensions: 31091
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)