BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0255.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312607|ref|YP_003776699.1| phospholipase A1 protein [Herba...   743   0.0  

>gi|300312607|ref|YP_003776699.1| phospholipase A1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/423 (84%), Positives = 392/423 (92%)

Query: 79  RRVALALCGVAAPLWLAAPAHAGISMVQPPKRIDATKPLELTLLVSEDEQAQRTYQLPAT 138
           R VALALC +   L +  PAHAGI++VQPPKRID +KPLELTLLVSE++Q +RTY LP+T
Sbjct: 16  RSVALALCALGGSLLIGMPAHAGITLVQPPKRIDVSKPLELTLLVSEEDQPERTYTLPST 75

Query: 139 LLVAASADMIPPQQIALQRVDGEDSLTLKQGEFRKVRYRGELPRRLRGMVRIEPIGMDAS 198
           LLVAASADMIPPQQI+LQRVD E S+TL+QG+FRK+RYRG LP RLRGMVRIEPIGMDA+
Sbjct: 76  LLVAASADMIPPQQISLQRVDSEGSITLRQGQFRKLRYRGMLPERLRGMVRIEPIGMDAA 135

Query: 199 PVLVAVVRPDPSLGPLPESPDLINTPLADSTSKVAPVAPSATVFTPGANASPIDSAPAAE 258
           PVLVAVVRPD +LG LPESPDLINTPLADS+S VAPVAPSATVFTPGA+ASP+DSAPAAE
Sbjct: 136 PVLVAVVRPDAALGALPESPDLINTPLADSSSTVAPVAPSATVFTPGADASPLDSAPAAE 195

Query: 259 DILSNSRRLSFNEPMYFTVGHNNGDTNARFQLSFKFRVFVPDDPRSRGLLDNLYLGYTQF 318
           DILSN+RRLSFNEPMYF+VG++ GDTNARFQLS KFR+FVPDDPRSRG LDNLYLGYTQF
Sbjct: 196 DILSNNRRLSFNEPMYFSVGNSGGDTNARFQLSLKFRLFVPDDPRSRGPLDNLYLGYTQF 255

Query: 319 SLWDLSAPSAPFRDTSYRPSLYYYLPDVGIQNRVFSRIGIATGLEHESNGRDGTASRSIN 378
           SLWDLSAPSAPFRDTSYRPSL+YYLPDVGIQNRV SRIGIATGLEHESNGRDG  SRSIN
Sbjct: 256 SLWDLSAPSAPFRDTSYRPSLFYYLPDVGIQNRVLSRIGIATGLEHESNGRDGAQSRSIN 315

Query: 379 TYFIEPTFNFGNLNDYHFKVAPKVYAYLGPTSDNPDIADYRGHLDLKLAYGKPDGLEVAT 438
           TYFIEP+FNFGNLNDYHFKVAPKVYAYLGPT DNPDI DYRGH+DLKL+YGKPDGLEVAT
Sbjct: 316 TYFIEPSFNFGNLNDYHFKVAPKVYAYLGPTRDNPDIGDYRGHMDLKLSYGKPDGLEVAT 375

Query: 439 MLRKGKLGGKYSAETQVTYPLSRLLPGTAGYLMASYFYGYGESLLTYNQKDHPQLRIGYA 498
           MLRKG+LGG  +++TQV+YPLSRLLPGTAGYLMASYF+GYGESLLTYNQKD  Q RIGYA
Sbjct: 376 MLRKGRLGGTLTSQTQVSYPLSRLLPGTAGYLMASYFHGYGESLLTYNQKDRAQFRIGYA 435

Query: 499 LWR 501
           LWR
Sbjct: 436 LWR 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,709,089
Number of extensions: 76240
Number of successful extensions: 264
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)