BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0254.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane pr...   896   0.0  

>gi|300313620|ref|YP_003777712.1| inner-membrane transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/454 (96%), Positives = 449/454 (98%)

Query: 1   VGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQPGARS 60
           VGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQ G R+
Sbjct: 77  VGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQAGPRT 136

Query: 61  LDNGNEVQLVLVAEQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQLVRDGN 120
           LDNGNE+QLVLVA+QGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQLVRDGN
Sbjct: 137 LDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNTTGAAINPSLYLQLVRDGN 196

Query: 121 KPGGESHFYSTFTGPAVYSSTEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYFVSAFI 180
           KPGGESHFYSTFTGPAVYS++EHFEKLDFEKIANGKQQHVNK DNGWIAMVQHYFVSAFI
Sbjct: 197 KPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNKTDNGWIAMVQHYFVSAFI 256

Query: 181 PPQNAQRDIFSKKVGDNLYAVGSILPLGSVAPNASVTMDSQLYSGPTVSKTLQAIAPGLD 240
           PPQNAQRD+FSKKVGDNLYAVGSILPLG+VAPNASVTMDSQLYSGPTVSKTLQAIAPGLD
Sbjct: 257 PPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQLYSGPTVSKTLQAIAPGLD 316

Query: 241 LVRDYGHLTVIAEPIFWLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSMAKMKA 300
           LVRDYGHLTVIAEPIFWLMTHIHN+VGNWGWTIILLTVLIKL+FFPLSAASYRSMAKMKA
Sbjct: 317 LVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKLIFFPLSAASYRSMAKMKA 376

Query: 301 VSPKMQAIRERHKGDPQAMNREMMALYKTEKINPLGGCLPIVIQIPVFIALYSVLLASVE 360
           VSPKMQAIRERHKGDPQAMNREMM LYKTEKINPLGGCLPI IQIPVFIALYSVLLASVE
Sbjct: 377 VSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIAIQIPVFIALYSVLLASVE 436

Query: 361 MRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQAKVM 420
           MRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQAKVM
Sbjct: 437 MRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQAKVM 496

Query: 421 MFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 454
           MFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW
Sbjct: 497 MFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQW 530


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,567,175
Number of extensions: 62634
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)