BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0246.p
         (382 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease [...   496   e-142

>gi|300312609|ref|YP_003776701.1| Fe3+ ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  496 bits (1278), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 308/354 (87%), Positives = 321/354 (90%), Gaps = 4/354 (1%)

Query: 1   MHIIGLLAVLIALPLFGILAAWFGLDAAGIDNLRQQMQTVLPGYLATSGWLALMVPLGVV 60
           MH IGLLAVLIALP+ GIL AWFGLDA G+D LRQQ +TVLPGYLATSGWLALMV LGVV
Sbjct: 1   MHFIGLLAVLIALPILGILCAWFGLDAEGLDALRQQAETVLPGYLATSGWLALMVTLGVV 60

Query: 61  LVGGAAAVTVSLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGAVQSTLRGWFPG 120
           +VGGA AVTVSLFEFRGRRW SWALLLPMAMPAYVSAYAYTDFLQYAG VQSTLRGWFPG
Sbjct: 61  VVGGATAVTVSLFEFRGRRWFSWALLLPMAMPAYVSAYAYTDFLQYAGVVQSTLRGWFPG 120

Query: 121 WRMDVRGLPGAVCMFVFTLYPYAYLLARNALSERGMHLMEAARMLGTPLSERIRRVALPL 180
           +RM+VRGLPGA+CMFV TLYPYAYLLARNALSERG HLMEAARMLG PLSERI RVALPL
Sbjct: 121 FRMEVRGLPGAICMFVLTLYPYAYLLARNALSERGTHLMEAARMLGAPLSERIVRVALPL 180

Query: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRIAAAQYASLLLLFVS 240
           ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDR+AAAQYASLLLLFV+
Sbjct: 181 ARPALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVT 240

Query: 241 VLLWLERREQGRMRFAATRGARGSEGAEARLPQLSGAQTLAAWTVCGLPVVLGFVLPVAI 300
           VLLWLERREQGRMRFAATRG RG +GAEARLP LS AQT  AW VCGLPVVLGFVLPVAI
Sbjct: 241 VLLWLERREQGRMRFAATRGGRGHDGAEARLPVLSRAQTALAWLVCGLPVVLGFVLPVAI 300

Query: 301 LLQLWAGQWGSSDAAMPAFDLARYAGWVWNSFRFGGMAALAAIVLALGLCFALR 354
           LL+LW   W  +   M  FD+ RYAGWVWNSFRFGGMAALAAIVLAL LCFALR
Sbjct: 301 LLRLW---WSEAGQGM-GFDVGRYAGWVWNSFRFGGMAALAAIVLALALCFALR 350


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 967,017
Number of extensions: 31044
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 382
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 295
Effective length of database: 1,207,925
Effective search space: 356337875
Effective search space used: 356337875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)