BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0244.p (903 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 1239 0.0 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 361 e-100 gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 316 5e-87 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 296 6e-81 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 290 3e-79 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 1239 bits (3205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/908 (69%), Positives = 738/908 (81%), Gaps = 6/908 (0%) Query: 1 MAEKFQAVECIGPDLDGYDIDEAIAGYRLQLSCLSLDAHLSLRKFIAQPVLLILQSDAKP 60 MAE+ QAVE +GP D ID+AIAGYRLQLSCLSL+A +SLRK + QPVLL L +D Sbjct: 36 MAERLQAVEQVGPGEDSSAIDQAIAGYRLQLSCLSLNADISLRKLLGQPVLLELDTDGGA 95 Query: 61 RHFHGHVTQCRLQGANGGMARYLLTIEPWLAFLRYRRDSRVYQDLTVPEIIDAVLRDYQG 120 R FHGHVT CR++GANGGMARYLLTIEPWL+FLR+RRDS V+QD++ P II+AV DY+G Sbjct: 96 RAFHGHVTACRMEGANGGMARYLLTIEPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRG 155 Query: 121 QGKLQPQWRMDLRDTRVYARRSLVTQYQESDLAFISRLLSEEGMFYYVEHAGVSNSPSLG 180 QG+LQP WR+DL+D YA+RSL TQYQE+DLAF++RL+ EEG+FYY+EH G SNS SLG Sbjct: 156 QGRLQPAWRLDLQDASAYAKRSLATQYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLG 215 Query: 181 AHTVVIADHNASFQSNARADVQFTQASAVMAQDSIDRWRSLDRWQTNSVEILTWDYRQAS 240 +HTVVIADHN SF+ NAR+ V F Q +AVMAQD+IDRWRS+ RWQTN+VEILTWDYRQ + Sbjct: 216 SHTVVIADHNGSFKPNARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTA 275 Query: 241 VREATSATPVQPGSAGLVLASRDAPGIYANENRAQADRQANMRMQAIEAHNQIFTGAGTV 300 VR A++A+ + LVL SRDAPG Y NE+ QA RQA +MQAIE N++FTGAGTV Sbjct: 276 VRAASTASSGENAHDKLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTV 335 Query: 301 RSFAPGTTFKLNGHPEHDGREDDRFVLTRVVHQAHNNLRADLKADVMKLLGQAVLPEEEH 360 RSF PGTTF L GH +HDG +DD+FVL RVVHQAHNNL ADLKA V LLGQA L + +H Sbjct: 336 RSFLPGTTFTLTGHYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDH 395 Query: 361 HSSLLDAALMPGNGEVRPVYRNRFEAIPYNIPYRTLLTTPDGQALYAKPTVTGQQTAVVV 420 SLLD AL + + RPVYRNRFEAI IPYR LL G+ LY KP GQQ+AVVV Sbjct: 396 KGSLLDTALRSADTQARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVV 455 Query: 421 GIRGQAVHTDRDHRVRVQFHWQRGERSHSSLSSPSRGGHSGAPANEASGTWVRVVAGLAP 480 G +GQAVHTDRD+R+RVQFHWQRGERSHS LSSP+ H GAPANE +GTWVRV+AGLAP Sbjct: 456 GAQGQAVHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPANEQAGTWVRVLAGLAP 515 Query: 481 TAGANWGGHALPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNRAVQGAGAATGN 540 TAGANWGG A+PRVGQEVLIDFIEGDIDRPVVIGTLYNGRG DNAQGN+A QGAG+ATGN Sbjct: 516 TAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQGAGSATGN 575 Query: 541 APPWFAGSSGPHGHAAVLSGIKTQAMGTSQSGTGGYQQLVFDDTPGQSRASLQQHTDAHD 600 AP WF GSSG H HAAVLSGIKTQA+ SQSG GGY QLVFDD+PGQ+RA+LQQH DAHD Sbjct: 576 APAWFPGSSGAHNHAAVLSGIKTQALSASQSGGGGYNQLVFDDSPGQARAALQQHADAHD 635 Query: 601 GASELNLGALRQQTDNRRLVPTGEGFELKTRQSAALRAGQGLLISTENSMGEQLDLRGGV 660 GASELNLG LRQQTDN+RL TG+GFELKT SAALRAGQGLL+STE S+ QLD+ G+ Sbjct: 636 GASELNLGLLRQQTDNQRLATTGQGFELKTLYSAALRAGQGLLVSTEKSISAQLDMTQGL 695 Query: 661 KQLVDSAEKQRQLAETAQKHHARFEGEGEAGKLPAVEALTDAIKVLTAT------ATRSA 714 QL +SA+KQ+QLAETAQKH+AR EGE +A KLPAVEA+ ++I+VL AT ++ S Sbjct: 696 SQLSESAQKQQQLAETAQKHNARLEGESDAAKLPAVEAMGESIEVLKATQSASTGSSGSD 755 Query: 715 PGAAEDSSNVPAFSAPQLQFSSAADIAAATPASAILAAGTSSSITAGQDINQIAQGNLHY 774 + ++ AFSAPQLQ SS A IAA TPASAI+AAG +SS+TAG+DINQIAQGNLHY Sbjct: 756 GQGSSATTATTAFSAPQLQLSSPAGIAAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHY 815 Query: 775 LIQSGISLFTHGLSGRNSKPLQDSGIALHAASGKVSVQSQSKNISLTSATQLTVASVEKH 834 L +SGISLFT+G + SKP Q++G+ALHAA+GKVSVQSQ+ LTSA QLTVASV K Sbjct: 816 LSKSGISLFTYGKASNGSKPNQETGMALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKD 875 Query: 835 VQITGKQHVQLAAQGAWLKLSGGNIEIHGPGSMEFKAGAKTLTGPQSAKAEASLPKPGPL 894 V + GKQHVQLAAQGAWL+L GGNIE+HGPG+MEF+A AK LTGP S+ + AS+P PGPL Sbjct: 876 VSVAGKQHVQLAAQGAWLRLEGGNIEVHGPGAMEFRASAKELTGPASSGSSASVPAPGPL 935 Query: 895 SECEYKSG 902 ++CEYKSG Sbjct: 936 ADCEYKSG 943 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust. Identities = 295/920 (32%), Positives = 428/920 (46%), Gaps = 133/920 (14%) Query: 27 YRLQLSCLSLDAHLSLRKFI-AQPVLLILQSDAKPRHFHGHVTQCRLQGANGGMARYLLT 85 +R + LS+ L L++FI A+ L +LQ+D R +HG+ TQ GA+GG+ARY L Sbjct: 57 FRFDIDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLR 116 Query: 86 IEPWLAFLRYRRDSRVYQDLTVPEIIDAVLRDYQGQGKLQPQWRMDLRDTRVYARRSLVT 145 +E +LAFL R DS ++QD+TV +I AVL++Y PQ L T+ A+R + T Sbjct: 117 LESFLAFLDRRHDSFLFQDMTVTDIAAAVLKEY-------PQANFSLEVTQTLAKRDICT 169 Query: 146 QYQESDLAFISRLLSEEGMFYYVEHAGV------SNSPSLGAHTVVIADHNASFQSNARA 199 QY+E+D AF+ R+L+ EG+ + EH S H +VI D NA + Sbjct: 170 QYRETDYAFLRRILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIFDRNAKAPALPGG 229 Query: 200 D--VQFTQASAVMAQDSIDRWRSLDRWQTNSVEILTWDYRQASVREATSATPVQPGSAGL 257 D ++F + +A+ A D+I + ++ + N V + +W + S + + G Sbjct: 230 DEYIRFHRVAAMEASDAITDFAAVRSVRPNGVALASWHPEKLSSPSHEEGSTLDAGELP- 288 Query: 258 VLASRDAPGIYANENRAQADRQANMRMQAIEAHNQIFTGAGTVRSFAPGTTFKLNGHPEH 317 L D G ++ A A + +QA+E N+ F GAG R A G F L H + Sbjct: 289 SLPVYDGTGQQDFADQDAAAAHAQLMLQALEMQNKRFEGAGAARQLAAGARFTLLQHERY 348 Query: 318 DGREDDRFVLTRVVHQAHNNLRADLKADVM----KLLGQAVLPEEEHHSSLLDAALMPGN 373 E + F + V H A NN+ A++ + L G + E D L G Sbjct: 349 PEGE-NAFKVVSVRHAARNNVSANITRILAPAAGALFGGSAAAER-------DDDLQAG- 399 Query: 374 GEVRPVYRNRFEAIPYNIPYRTLLTTPDGQALYAKPTVTGQQTAVVVGIRGQAVHTDRDH 433 YRN F AI ++P P A KPT G QTA+V G AV TDR+H Sbjct: 400 -----TYRNSFTAIRDSVPM-----VPAAIAERLKPTARGTQTALVTGAADAAVTTDRNH 449 Query: 434 RVRVQFHWQRGERSHSSLSSPSRGG----------HSGAPANEASGTWVRVVAGLAPTAG 483 RV+VQFHWQRG+ SP+ GG A N++SGTW+RV +G Sbjct: 450 RVKVQFHWQRGK-------SPNPGGLRETGNLDDKDGNANGNDSSGTWIRVAEA---QSG 499 Query: 484 ANWGGHALPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNRAVQGAGAATGNAPP 543 NWG +PRVG EVL+DFIEGDIDRPVV+ LYNG +APP Sbjct: 500 PNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNG-------------------SDAPP 540 Query: 544 WFAGSSGPHGHAAVLSGIKTQAMGTSQSGTGGYQQLVFDDTPGQSRASLQQHTDAHDGAS 603 + AG+ HA +SG + A S G+ Q V DDT Q R L T S Sbjct: 541 FPAGADSGINHAGSISGWHSTAHDGS-----GFNQWVVDDTQSQLRMRLASST----AKS 591 Query: 604 ELNLGALRQQTDN--RRLVPTGEGFELKTRQSAALRAGQGLLISTE-------NSMGEQL 654 +LNLG L +Q D +R G+GFEL++ +R G+GLL+ST + G Q+ Sbjct: 592 QLNLGHLVEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQM 651 Query: 655 DLRGGVKQL----------VDSAEKQRQLAET----AQKHHARFEGEGEAGKLPAVEALT 700 D G + QL DSA +Q+ L+ T A+ + GK PA Sbjct: 652 DAAGAIAQLKGAKSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQ 711 Query: 701 DAIKVLTATATRSAPGAAEDSSNVPAFSAPQLQFSSAADIAAATPASAILAAGTSSSITA 760 DA+K + +TR+ A P +F+ AA + +P+S + S+ + A Sbjct: 712 DALK--SDGSTRNTDAA-----------QPVEKFAKAA-VLMDSPSSINWTSNASTLLYA 757 Query: 761 GQDINQIAQGNLHYLIQSGISLFTHGLSGRNSKPLQDSGIALHAASGKVSVQSQSKNISL 820 +++ QG++H+ S + S D GI AA+G VS+Q+ + + + Sbjct: 758 AENLQWTTQGDVHWSAADTASAAAGKAASFYS---HDGGIQAFAANGPVSLQAHTDALEI 814 Query: 821 TSATQLTVASVEKHVQITGKQHVQLAAQGAWLKLSGGNIEIHGPGSMEFKAGAKTLTGPQ 880 + +TV SV ++I +Q + L A A + L GGNI PG+ K G Sbjct: 815 LADKDVTVTSVNDSIEIKARQKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGA 874 Query: 881 SAKAEASLPKPGPLSECEYK 900 S P L + +YK Sbjct: 875 SVS-----PDLMALPDTKYK 889 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 316 bits (810), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 305/968 (31%), Positives = 444/968 (45%), Gaps = 149/968 (15%) Query: 30 QLSCLSLDAHLSLRKFIAQPVLLILQ-SDAKPRHFHGHVTQCRLQGANGGMARYLLTIEP 88 ++ LSLDA L L+ I Q L+ SD F G V + G+ GG+ARY L I P Sbjct: 49 EVIVLSLDAGLRLKSLIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVP 108 Query: 89 WLAFLRYRRDSRVYQDLTVPEIIDAVLRDYQGQGKLQPQWRMDLRDTRVYAR-RSLVTQY 147 W+ L +SRV+QD TV +I++ V DY W ++ + RS QY Sbjct: 109 WVWLLSQSHNSRVWQDKTVIDIVEDVFADYAPHAAWT--WTDEVAPFMQQVQPRSYTIQY 166 Query: 148 QESDLAFISRLLSEEGMFYYVEHAGVSNSPSLGAHTVVIADHNA--SFQSNARAD----- 200 +ES+LAF+SRLL+ EG+ + VE + + S G V+ AD + +F + + Sbjct: 167 RESNLAFVSRLLAAEGLSWRVEESADAAS---GHRLVLFADSTSPRAFPEDLTSTSPLGG 223 Query: 201 --VQFTQASAVMAQDSIDRWRSLDRWQTNSVEILTWDYRQASVREATSATPVQ---PGSA 255 ++F +A QDSI + Q S +L++DY+ S + ++ P + G Sbjct: 224 SGIRFHAGTAREEQDSIQALAARRALQPASFTLLSYDYK--SKQAVATSLPTRHEFGGKD 281 Query: 256 GLVLASRDAPGIYANENRAQADRQANMRMQAIEAHNQIFTGAGTVRSFAPGTTFKLNGHP 315 L S D+PG+YA + A+AD A + ++A EA N+++ TVR+ PGT F L P Sbjct: 282 APRLESYDSPGLYAYTDAAEADHYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGP 341 Query: 316 -----EHDGREDDRFVLTRVVHQAHNNLRADLKADVMKLLG------QAVLPEEEHHSSL 364 DG VL+ V+ NNL D + +L G + + E SL Sbjct: 342 LGLSAAQDGAPRQYAVLS-VMSVGVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSL 400 Query: 365 L------DAALMPGNGEVRPV--------YRNRFEAIPYNIPYRTLLTTPDGQALYAKPT 410 L D+ + G ++ V Y N FEAI ++ +R +L G L+A+ T Sbjct: 401 LHGQSGPDSLQLLGQTDIAGVIAQARQLGYANAFEAIRADVIWRPVLADGTGLRLHARAT 460 Query: 411 VTGQQTAVVVGIRGQA-------VHTDRDHRVRVQFHWQRGERSHSSLSSPSRGGHSGAP 463 G Q+A+VVG +G+ +H DR RVR++FHWQ G Sbjct: 461 ARGSQSAIVVGPQGETSASSAGEIHCDRLGRVRIRFHWQ------------------GRN 502 Query: 464 ANEASGTWVRVVAGLAPTAGANWGGHALPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQ- 522 + A+ WVRV A A + GA G LPR+GQEVL+ FIE DIDRPV++G LYNGRG+ Sbjct: 503 NDAAATCWVRV-AQRAASGGA--GMQFLPRIGQEVLVQFIEDDIDRPVIVGALYNGRGEG 559 Query: 523 --------DNAQGN-----RA------VQGAG---AATGNAPPWFAGS--SGPHGHAAVL 558 D AQ RA +Q +G A GNAP W GS S HG+ A Sbjct: 560 AAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAPTWHGGSQDSDGHGNTAAQ 619 Query: 559 SGIKTQAMGTSQSGTGGYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDNRR 618 GI+++ G S GY Q+VFDDT Q R L+ SELNLG L DN R Sbjct: 620 WGIRSKEFGGS-----GYNQIVFDDTDAQGRIQLK----TTQSGSELNLGHLIHTADNYR 670 Query: 619 LVPTGEGFELKTRQSAALRAGQGLLISTEN------SMGEQLDLRGGVKQLVDSAEKQRQ 672 G G EL+T ALRAG G+L S+ S D GG+ L +A + Sbjct: 671 GSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQAALLGKT 730 Query: 673 LAETAQKHHARFEGEGEAGKLPAVEALTDAI-------KVLTATATRSAPGAAEDS---- 721 E H G A L +A I + + A+ G+ E+S Sbjct: 731 FNEATLTHKT----VGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPENSGADV 786 Query: 722 ---------SNVPAFSAPQLQFSSAADIAAATPASAILAAGTSSSITAGQDINQIAQGNL 772 S +P +A + ++ + A LA G + ++ +G D Q+A GN Sbjct: 787 AAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVA-GN- 844 Query: 773 HYLIQSGISLFTHGLSGRNSKPLQDSGIALHAASGKVSVQSQSKNISLTSATQLTVASVE 832 Y ++SG +L L+G + +G+ + AA + VQ+Q+ +++ + Q+ V S Sbjct: 845 QYRLRSGQALGV--LAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISAN 902 Query: 833 KHVQITGKQHVQLA-AQGAWLKLSGGNIEIHGPGSMEFKAGAKTLTGPQSAKAEASLPKP 891 V + + L+ A GA + + GGNI + PG + A K GP S +LP P Sbjct: 903 AGVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVS----KTLPLP 958 Query: 892 G-PLSECE 898 P S C+ Sbjct: 959 QMPNSVCK 966 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 296 bits (757), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 259/884 (29%), Positives = 387/884 (43%), Gaps = 152/884 (17%) Query: 26 GYRLQLSCLSLDAHLSLRKFIAQPVLLILQ---SDAKPRHFHGHVTQCRLQGANGGMARY 82 GY + +S + L+K IAQPV L LQ SD P HG+V R G++G +A + Sbjct: 60 GYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAP--LHGYVHTARRLGSDGQLASF 117 Query: 83 LLTIEPWLAFLRYRRDSRVYQDLTVPEIIDAVLRDYQGQGKLQPQWRMDLRDTRVYAR-- 140 + + PWL FL+YR+D+R++QD +I+ D+ D YAR Sbjct: 118 QIGMAPWLHFLKYRKDARIWQDSKADDIL------------------ADVFDQHAYARGN 159 Query: 141 -----------RSLVTQYQESDLAFISRLLSEEGMFYYVEHAGVSNSPSLGAHTVVIADH 189 RS TQY E+D F+ RL+ EEG + Y E P H +VI D+ Sbjct: 160 YRFEIVTPALPRSYCTQY-ETDWHFVQRLMEEEGWYAYHEQ-----KPDGSGHVLVITDN 213 Query: 190 NASFQSNARADVQFTQASAVMAQDSIDR---WRSLDRWQTNSVEILTWDYRQASVREATS 246 + A + F A QD ++R W + + + T DY+ ++ T Sbjct: 214 TDQAKPLAPEQLAFHGAGT---QDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQTQ 270 Query: 247 ATPVQPGSAGLV--LASRDAPGIYANENRAQADRQANMRMQAIEAHNQIFTGAGTVRSFA 304 V P L L + G Y+ + DRQA +R++ E+ + F G R+ A Sbjct: 271 ER-VLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLA 329 Query: 305 PGTTFKLNGHPEH--DGREDDRFVLTRVVHQAHNNLRADLKADVMKLLGQAVLPEEEHHS 362 G F L HP H D ++D +F+L V NNL L G ++ P+ + Sbjct: 330 AGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNL--PLSGTARDFPG-SLKPQLDAFK 386 Query: 363 SLLDAALMPGNGEVRPVY-RNRFEAIPYNIPYRTLLTTPDGQALYAKPTVTGQQTAVVVG 421 + + + G R + NRFE +PYR+ + KP V QTAVVVG Sbjct: 387 ASMGRSNDDAGGNARTGHCFNRFEVQRRKLPYRSPFD-------HTKP-VMHPQTAVVVG 438 Query: 422 IRGQAVHTDRDHRVRVQFHWQRGERSHSSLSSPSRGGHSGAPANEASGTWVRVVAGLAPT 481 +G+ V TD+ +RV+VQF W R P +E + WVRV P Sbjct: 439 PQGEEVFTDKLNRVKVQFRWDRIN-----------------PGDEKASCWVRVSY---PN 478 Query: 482 AGANWGGHALPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGQDNAQGNRAVQGAGAATGNA 541 AG NWG +PRVGQE++I F+ GD DRPV G L+N Sbjct: 479 AGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE-------------------QP 519 Query: 542 PPWFAGSSGPHGHAAVLSGIKTQAMGTSQSGTGGYQQLVFDDTPGQSRASLQQHTDAHDG 601 P W LSG+K++ G + G+ QLV DDT Q+R H + Sbjct: 520 PQWHTDGR--------LSGLKSKEFGGN-----GFNQLVMDDTTSQNRV----HLYSSQS 562 Query: 602 ASELNLGALRQQTDNRRLVPTGEGFELKTRQSAALRAGQGLLIST---ENSMGEQLDLRG 658 ++LNLG L Q DN R G GF L T A+ +GL +S+ G QLD Sbjct: 563 NAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASE 622 Query: 659 GVKQLVDSAEKQRQLAETAQKHHARFEGEGEAGKLPAVEALT-DAIKVLTATATRSAPGA 717 + SA+ R L+++A + A EAL D++K G Sbjct: 623 ATSLMKASADLARGLSDSASRAGA--------------EALAQDSLKDFVDATEDKYSGQ 668 Query: 718 AEDSSNVPAFSAPQLQFSSAADIAAATPASAILAAGTSSSITAGQDINQIAQGNLHYLIQ 777 + S+N F P L ++ A I AT + + +++T+G+D + + +L ++ Sbjct: 669 GQGSAN--RFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVK 726 Query: 778 SGISLFTHGLSGRNSKPLQDSGIALHAASGKVSVQSQSKNISLTSATQLTVASVEKHVQI 837 ISLF Q++G+ L AA GKV +Q+QS ++ L + + S V+I Sbjct: 727 EKISLFA-----------QNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEI 775 Query: 838 TGKQHVQLAAQGAWLKLSGGNIEIHGPGSMEFKAGAKTLTGPQS 881 K V ++A G++++++ I PG E KA ++ GP S Sbjct: 776 HAKDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPAS 819 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 267/880 (30%), Positives = 393/880 (44%), Gaps = 121/880 (13%) Query: 26 GYRLQLSCLSLDAHLSLRKFIAQPV-LLILQSDAKPRHFHGHVTQCRLQGANGGMARYLL 84 GY + + L+ ++L + IAQPV L I Q D HG+V + G++G + L Sbjct: 48 GYEVTIDLLATHTGIALEQLIAQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQL 107 Query: 85 TIEPWLAFLRYRRDSRVYQDLTVPEIIDAVLRDY-QGQGKLQPQWRMDLRDTRVYARRSL 143 ++ PWL FLR+R+D+R++QD +I+ V ++ Q +G +R L R Y R Sbjct: 108 SLSPWLHFLRFRKDARIWQDKRTEDILADVFNNHPQARG----HYRFQLE--RPYTPRPY 161 Query: 144 VTQYQESDLAFISRLLSEEGMFYYVEHAGVSNSPSLGAHTVVIADHNASFQSNARADVQF 203 TQY E+D F+ RL+ EEG F + E + H +VI D+ + + + F Sbjct: 162 CTQY-ETDWHFVQRLMEEEGWFAHHEQREDGS-----GHVLVITDNTWNLPGLPQQGIAF 215 Query: 204 TQASAVMAQDSIDRWRSLDRWQTNSVEILTWDYRQASVR-EATSATPVQPGSAGLVLASR 262 A+ D I W + + + DY+ ++ EA + G L Sbjct: 216 HGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMY 275 Query: 263 DAPGIYANENRAQADRQANMRMQAIEAHNQIFTGAGTVRSFAPGTTFKLNGHPEHDGRED 322 + G Y+ + Q +RQA+++++ E+ Q ++ VR+ A G F+L HP+H D Sbjct: 276 EYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPD 335 Query: 323 D--RFVLTRVVHQAHNNLRADLKA-DVMKLLGQAVLPEEEHHSSLLDAALMPGNGEVRPV 379 +FV+ + NNL +A D L A++ +E S + + + E Sbjct: 336 RERQFVILAIDWFVENNLPLSHQALDFPGSLKGALMAFKE--SIRRERQVAETDNEHTGH 393 Query: 380 YRNRFEAIPYNIPYRTLLTTPDGQALYAKPTVTGQQTAVVVGIRGQAVHTDRDHRVRVQF 439 NRFE +P+R +A+P V QTA+VVG + V+TD R++VQF Sbjct: 394 CFNRFEVQRRKLPFRPARA-------HARP-VMLPQTAIVVGPASEEVYTDHLDRIKVQF 445 Query: 440 HWQRGERSHSSLSSPSRGGHSGAPANEASGTWVRVVAGLAPTAGANWGGHALPRVGQEVL 499 W R P NEA+ WVRV P AG WG +PR+GQEV+ Sbjct: 446 RWDRIN-----------------PGNEAASCWVRVSY---PNAGQYWGAIQVPRIGQEVI 485 Query: 500 IDFIEGDIDRPVVIGTLYNGRGQDNAQGNRAVQGAGAATGNAPPWFAGSSGPHGHAAVLS 559 + F+ GD DRPVV G L+N + P W LS Sbjct: 486 VSFLNGDPDRPVVTGRLFNAEQR-------------------PQWHTNGR--------LS 518 Query: 560 GIKTQAMGTSQSGTGGYQQLVFDDTPGQSRASLQQHTDAHDGASELNLGALRQQTDNRRL 619 G+K++ G GT G+ Q+V DDTP Q+R L T+ H ++LNLG L QT N R Sbjct: 519 GVKSKEFG----GT-GFNQMVMDDTPEQNRIHLYS-TNTH---AQLNLGHLVSQTGNERR 569 Query: 620 VPTGEGFELKTRQSAALRAGQGLLIST---ENSMGEQLDLRGGVKQLVDSAEKQRQLAET 676 G GF L T A+ +GL IST + G QLD R QL A R L+ET Sbjct: 570 SFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSET 629 Query: 677 AQKHHARFEGEGEAGKLPAVEALTDAIKVLTATATRSAPGAAEDSSNVPA--FSAPQLQF 734 A K A E AG+ EAL D I A ED S A F L Sbjct: 630 AAKAGA----EPLAGQ----EALRDFIDATQAD--------YEDPSQAQANRFQQAILLA 673 Query: 735 SSAADIAAATPASAILAAGTSSSITAGQDINQIAQGNLHYLIQSGISLFTHGLSGRNSKP 794 +S I TP AG ++++G D + +L + ISLF Sbjct: 674 ASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAF--------- 724 Query: 795 LQDSGIALHAASGKVSVQSQSKNISLTSATQLTVASVEKHVQITGKQHVQLAAQGAWLKL 854 +GI L +A GKV VQ+QS ++ L + + S V+I K+ V + A G++++L Sbjct: 725 --KAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRL 782 Query: 855 SGGNIEIHGPGSMEFKAGAKTLTGP-----QSAKAEASLP 889 + I G+ E KAG + GP + K+ A+LP Sbjct: 783 NASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP 822 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,755,342 Number of extensions: 115050 Number of successful extensions: 542 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 463 Number of HSP's successfully gapped: 10 Length of query: 903 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 809 Effective length of database: 1,174,780 Effective search space: 950397020 Effective search space used: 950397020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)