BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0243.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310084|ref|YP_003774176.1| hypothetical protein Hsero_0749...   399   e-112

>gi|300310084|ref|YP_003774176.1| hypothetical protein Hsero_0749
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/312 (62%), Positives = 241/312 (77%), Gaps = 1/312 (0%)

Query: 22  MNNPSLNEEIRAALFQLREAHPHCHIHVLLDGNHPCFEGDPLHLHQLAKREIPANPIIVP 81
           M+   +NE++RA LFQLRE HP  H+H+LLDGNHPC + D LH+ +LAKR+IPA  + VP
Sbjct: 1   MSQSKVNEQLRAVLFQLREVHPRSHVHLLLDGNHPCADDDALHIARLAKRDIPAKAVPVP 60

Query: 82  RADYLHDPSICPALVTLHSPGDRGYPDDELFDLAIAHAWRRRASINGSYVAGWLVSEKPA 141
           RAD++HDP+ICP+LVTL+SPGDRGYPD+ L DL+I HAWRRR SINGSYV GWLVSE PA
Sbjct: 61  RADFVHDPAICPSLVTLYSPGDRGYPDELLLDLSIDHAWRRRDSINGSYVCGWLVSESPA 120

Query: 142 KEVAAHIAESCELFDLLNGRRRFLPLFEPHRLSLLANTDRKSFLHRWLGPISHWLWLDLN 201
            ++A H+A +CELFD+L G RR LPLFEPHRLSL+A+   +SFL RWLGPISHWLWLD+ 
Sbjct: 121 HDIATHLARACELFDVLRGCRRVLPLFEPHRLSLVADAGLESFLRRWLGPISHWLWLDMQ 180

Query: 202 GQLNNLAAHDLNRDGTSPGEQLEQRDWMMQHRVADALLVAMAMQEAQHRLPSNPEIAIDA 261
           G+L++LA ++L  +G S  E L QR W  Q RVA+A LVAMAM +A   LP++PE AIDA
Sbjct: 181 GELHSLAVNELA-EGISSKEHLSQRHWQAQQRVANARLVAMAMADAGIILPTHPETAIDA 239

Query: 262 SLKRAKARGLQRTEDLIFTALNDFSLSAGWADHLAAQWAIEQALVGERSLSKVMTTLPDE 321
           SL+RA   GLQRTEDL+F ALNDFS+S  W  H AA  AI QA  GE++LS++M  L D 
Sbjct: 240 SLQRAGDLGLQRTEDLVFFALNDFSISRDWTAHPAAAKAIRQAQQGEQTLSELMCELSDN 299

Query: 322 ILNEIANNRPAD 333
            L EIA +R AD
Sbjct: 300 TLEEIAASRGAD 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,125,830
Number of extensions: 49353
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)