BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0238.p (284 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 249 2e-67 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 186 3e-48 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 184 5e-48 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 182 3e-47 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 176 2e-45 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 249 bits (636), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/258 (47%), Positives = 175/258 (67%), Gaps = 3/258 (1%) Query: 1 MDHNFLSVQGLAKRY--AAGAPPVFEQVSFGIDRGEFVCVIGHSGCGKTTILNVLAGLEA 58 ++ F+ + G+ + G +++ + +GEFV +IGHSGCGK+T+LN++AGL Sbjct: 6 INGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAGLLK 65 Query: 59 ASEGVVIMDQREVKGPSLDRGVVFQSHALMPWFSVLGNVVFAV-RSRWPDWPRAKAEEHA 117 SEGV++ RE+ GP+ +R VVFQ+H+L+PW S N+ V R R + + Sbjct: 66 PSEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLRDRT 125 Query: 118 RRFIEMVGLKGAEHKKPSELSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQD 177 R + +VGL AE+K+P+E+SGGMKQRVGIARA ++EPK+LLMDEPFGALDALTR +QD Sbjct: 126 RAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQD 185 Query: 178 ELLKICAATHQTVFMITHDVDEAILLADKIFLMSNGPQACIAEVVINTLPKNRTREGMHH 237 ELLKI A T TV M+THDVDEA+LL+D+I +M+NGP A I EV+ L + R R + Sbjct: 186 ELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDRVVLAQ 245 Query: 238 DPQFYRIRNHLVDFLVHR 255 DP++ + R +++FL + Sbjct: 246 DPEYGQYRTAVLEFLYRK 263 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 186 bits (471), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 98/265 (36%), Positives = 157/265 (59%), Gaps = 9/265 (3%) Query: 6 LSVQGLAKRYAAGAPPV--FEQVSFGIDRGEFVCVIGHSGCGKTTILNVLAGLEAASEGV 63 + +QG+ K + V + ++ I G+FVC++G SGCGK+T+LN +AG S G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 64 VIMDQREVKGPSLDRGVVFQSHALMPWFSVLGNVVFAVRSRWPDWPRAKAEEHARRFIEM 123 ++ D + V P DRG+VFQ +AL PW +V NV F + + P+A+ + + ++ Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGT--PKAEIHQRVTQLLDK 127 Query: 124 VGLKGAEHKKPSELSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKIC 183 +GL + P +LSGGM+QRV IAR +++ ++LMDEPFGALDALTR +QDELL+I Sbjct: 128 LGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIW 187 Query: 184 AATHQTVFMITHDVDEAILLADKIFLMSNGPQACIAEVVINTLPKNRTREGMHHDPQFYR 243 +T+ +TH ++EAI LAD+I +M+ P ++++N LP+ R DP+F Sbjct: 188 DEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVN-LPRLRD----PADPEFNA 242 Query: 244 IRNHLVDFLVHRSRQIQAAQASGAA 268 ++ L ++ ++ A+ AA Sbjct: 243 LKRELGQLVMEEQQRHHNAEMKAAA 267 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 184 bits (468), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 108/258 (41%), Positives = 154/258 (59%), Gaps = 10/258 (3%) Query: 6 LSVQGLAKRYAAGAPPVFEQVSFGIDRGEFVCVIGHSGCGKTTILNVLAGLEAASEGVVI 65 LS +AK + G V E+ + I GE V ++G SGCGK+T+L++ AGLE S G V Sbjct: 3 LSFNNVAKHF--GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 66 MDQREVKGPSLDRGVVFQSHALMPWFSVLGNVVFAVRSRWPDWPRAKAEEHARRFIEMVG 125 D + ++GP +R ++FQ +AL PW ++ NV A+ + D + KA E AR ++E V Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVD--KKKAAEQARVWLENVK 118 Query: 126 LKGAEHKKPSELSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICAA 185 LKG EH P ++SGGM+QR +ARAF +PK LL+DEPFGALDALTR +QD L + Sbjct: 119 LKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQ 178 Query: 186 THQTVFMITHDVDEAILLADKIFLMSNGPQACIAEVVINTLPKNRTREGMHHDPQFYRIR 245 TV ++THDVDEA+ LAD+IF+ S P + E N + +T H +F IR Sbjct: 179 QGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKE--FNLVHHEKT----HDLSEFAAIR 232 Query: 246 NHLVDFLVHRSRQIQAAQ 263 ++ L + Q + A+ Sbjct: 233 RDILCLLGIHAEQDEFAK 250 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 182 bits (461), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 107/232 (46%), Positives = 144/232 (62%), Gaps = 4/232 (1%) Query: 18 GAPPVFEQVSFGIDRGEFVCVIGHSGCGKTTILNVLAGLEAASEGVVIMDQREVKGPSLD 77 G+ + + I GEFVC++G SGCGK+T+LN +AG + S G + +D + VKGP LD Sbjct: 17 GSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVS-GEISVDGKRVKGPGLD 75 Query: 78 RGVVFQS-HALMPWFSVLGNVVFAVRSRWPDWPRAKAEEHARRFIEMVGLKGAEHKKPSE 136 RGVVFQS AL PW SV NV + ++ R A+ A R++ +VGLK A K P+E Sbjct: 76 RGVVFQSSEALFPWLSVRENVEYGLKLR--GVASAERRAAAERYVSLVGLKHAIDKFPAE 133 Query: 137 LSGGMKQRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICAATHQTVFMITHD 196 LSGGM+QR IAR EP ++LMDEPFGALDA TR V+Q EL +I +T T+ +THD Sbjct: 134 LSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHD 193 Query: 197 VDEAILLADKIFLMSNGPQACIAEVVINTLPKNRTREGMHHDPQFYRIRNHL 248 + EAILLAD++ M+ GP+A I + LP R + RIR+ + Sbjct: 194 IWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDI 245 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 141/240 (58%), Gaps = 6/240 (2%) Query: 23 FEQVSFGIDRGEFVCVIGHSGCGKTTILNVLAGLEAASEGVVIMDQREVKGPSLDRGVVF 82 ++VS I G FV +G SGCGK+T+LN +AG SEG + +D + V GP +RGVVF Sbjct: 22 LDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGVVF 81 Query: 83 QSHALMPWFSVLGNVVFAVRSRWPDWPRAKAEEHARRFIEMVGLKGAEHKKPSELSGGMK 142 Q +L+PW SV NV ++ + ++ + E A+ + +VGL+ P ELSGGM+ Sbjct: 82 QKDSLLPWKSVQDNVALGLK--FAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGMR 139 Query: 143 QRVGIARAFSIEPKMLLMDEPFGALDALTRGVVQDELLKICAATHQTVFMITHDVDEAIL 202 QRVG+ARA + PK+LLMDEPFGALD++TR +Q+ L+ + A T + VF ITH ++EA+ Sbjct: 140 QRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALF 199 Query: 203 LADKIFLMSNGPQACIAEV---VINTLPKNRTREGMHHDPQFYRIRNHLVDFLVHRSRQI 259 L ++ +MS P +A + + +P F +R + +VH+S + Sbjct: 200 LGTEVIVMSPRPGRIVARFETDFVRRFAAGCEARAIKTEPAFAELREE-IRAIVHQSEDL 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 871,594 Number of extensions: 34999 Number of successful extensions: 500 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 133 Length of query: 284 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 200 Effective length of database: 1,222,130 Effective search space: 244426000 Effective search space used: 244426000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)