BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0237.p (279 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 194 5e-51 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 89 4e-19 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 87 2e-18 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 84 1e-17 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 75 5e-15 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 194 bits (494), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 128/177 (72%) Query: 70 LSNPFYDNGPNDKGIGIQLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQI 129 ++PFY N PND+GIG + SL RVG GF +AA+V +PLGF +G + R P I + Sbjct: 95 FADPFYRNSPNDQGIGWNVLASLQRVGTGFGLAALVGIPLGFAIGRVEFLARMFGPIISL 154 Query: 130 LKPISPLAWMPLALYTIKDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEV 189 L+P+SPLAW+P+ L K ++ + ++ IFICS+WPM++NTA GV V +D++NVA+ L + Sbjct: 155 LRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVARVLNL 214 Query: 190 SPLRRAFLVILPAAAPTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLS 246 S + ++ P+ P +LTG+R+S+G AWLVIVAAEML GG GIG++VW+EWNNL+ Sbjct: 215 SEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLN 271 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 108/185 (58%) Query: 91 SLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSS 150 SL RV GF I A +A+PLG L+G S + +N +Q+++PI P+A++PLA+ + Sbjct: 80 SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWFGLGN 139 Query: 151 VSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVSPLRRAFLVILPAAAPTILTG 210 +F+I + + +P+LMNT GV V +L A+ L S V+LPAA P IL+G Sbjct: 140 PPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPYILSG 199 Query: 211 MRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVLDLIFAR 270 +RI +G A++V++ AEM+ G+G+ + +I ++ IG+ G+ +DL +R Sbjct: 200 VRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDLGMSR 259 Query: 271 LQKWV 275 L ++ Sbjct: 260 LNNYM 264 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 2/176 (1%) Query: 91 SLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTIKDSS 150 S GR+ G+ V+ VPLG +G +++ L+P+I+ + I P+A++ LA+ + Sbjct: 67 SSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGE 126 Query: 151 VSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVSPLRRAFLVILPAAAPTILTG 210 +S + +IF +V+ + +NT GV +V L A +L + VILP+ P ++TG Sbjct: 127 LSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTG 186 Query: 211 MRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIF-AILVIGVTGMVLD 265 RI+MG ++L +V+AE++ G+G +W N S T +F I+ +G+ G + D Sbjct: 187 ARIAMGNSFLTVVSAEIVSAREGLGALIWTA-RNFSRTEWVFVGIIALGILGYLFD 241 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 81/152 (53%) Query: 87 QLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTI 146 +A SL RV GF I + +AV LG L+G+S + L P Q L+ I LAW+PL L + Sbjct: 75 HIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLLLLWL 134 Query: 147 KDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVSPLRRAFLVILPAAAPT 206 V +I I + +P+ +N G+ + + V T ++ ++LPA+ P Sbjct: 135 GIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPASLPY 194 Query: 207 ILTGMRISMGIAWLVIVAAEMLVGGTGIGYFV 238 + G+R + +AW+ +VAAE++ G+GY + Sbjct: 195 LFAGLRGGLSLAWMFLVAAELIAATKGVGYLL 226 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 4/181 (2%) Query: 87 QLAYSLGRVGLGFAIAAVVAVPLGFLLGMSPLMQRALNPFIQILKPISPLAWMPLALYTI 146 LA S GR GFA+ A + + LG L G + L+ +Q+++ I LA +PL + Sbjct: 83 HLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWF 142 Query: 147 KDSSVSGVFVIFICSVWPMLMNTAFGVASVRRDWLNVAKTLEVS--PLRRAFLVILPAAA 204 + +F++ + +P+ +NT G+ SV + + +AK+ +S PL R VILP A Sbjct: 143 GIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRD--VILPGAL 200 Query: 205 PTILTGMRISMGIAWLVIVAAEMLVGGTGIGYFVWNEWNNLSLTSVIFAILVIGVTGMVL 264 P IL G+R ++G+ W++++ AE + GIGY N L V+ IL+ + G + Sbjct: 201 PAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLA 260 Query: 265 D 265 D Sbjct: 261 D 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 881,064 Number of extensions: 39263 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 15 Length of query: 279 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 195 Effective length of database: 1,222,130 Effective search space: 238315350 Effective search space used: 238315350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)