BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0235.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312077|ref|YP_003776169.1| response regulator containing a... 189 2e-49 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 175 3e-45 gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 129 2e-31 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 119 3e-28 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 103 1e-23 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/211 (46%), Positives = 141/211 (66%), Gaps = 3/211 (1%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 I++L+ DDH IVREGL+QI A + DI VA A+G E + AR D++LLDI +P ++ Sbjct: 9 IKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVLPDRN 68 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 G+D+L+QI++E P LPVL+LS + E QYA R K GAAG+LNK P +L+ AIR+AA G Sbjct: 69 GIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQAASG 128 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPN 187 YVS +A+ LA+ + P HE+LS REYQ +IA+G++V +IA +L LS Sbjct: 129 RKYVSPSLAQELANQIGFDHETP---LHETLSDREYQTMVMIASGKTVSDIAAELTLSVK 185 Query: 188 TVSTYRSRILEKTGASNDVGIAMYAVRHQLL 218 T+S YRSR+L K ++ + YA+++ L+ Sbjct: 186 TISMYRSRVLSKMKMRHNAELTHYALKNALV 216 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 133/210 (63%), Gaps = 4/210 (1%) Query: 9 RILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQDG 68 +IL+ DDH +VR G+ +++ P +E+ E ++ E + R + D+VLLDIA+P + G Sbjct: 3 KILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSG 62 Query: 69 LDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGGG 128 ++VL+QIK+E P LPVLMLS +PE +YA + + GA+GY+ K +L+ AI G Sbjct: 63 VEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGH 122 Query: 129 LYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPNT 188 Y+S +AE L S ++ HE+LS REY++F + G+ V +IAD+L LS T Sbjct: 123 KYISYGVAELLTS----EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKT 178 Query: 189 VSTYRSRILEKTGASNDVGIAMYAVRHQLL 218 VSTYRSR+L+K +N+ I YA+++ L+ Sbjct: 179 VSTYRSRVLQKMSMTNNADIIYYAIKNNLI 208 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 1/206 (0%) Query: 9 RILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQDG 68 RI+L DDH +VR G+K +L P +EV E + G EV+ DLVLLDIA+ +G Sbjct: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 Query: 69 LDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGGG 128 L+ LR+++ E P + LMLS Y ++Y + GA GYL K + +L +A+ + G Sbjct: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 Query: 129 LYVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPNT 188 Y+ + ++ +R A E L+ R+ ++ QLIA G + KEIA QL +S T Sbjct: 124 QYLDSHISREALDNYMKR-VAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKT 182 Query: 189 VSTYRSRILEKTGASNDVGIAMYAVR 214 + T+R++++E+ + G+ YA+R Sbjct: 183 IETHRAQLMERLDIRDVPGLVRYAIR 208 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 3/213 (1%) Query: 8 IRILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQD 67 IRILL DDH + R G++ +L PDI+V E G + + A D+VL+D+ +P Sbjct: 3 IRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLS 62 Query: 68 GLDVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGG 127 GL+ ++ I Q++P VLMLS E GA GYL K+ + + L+++I++AA G Sbjct: 63 GLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAG 122 Query: 128 GLYVSAQMAETLASGLAQRATAPQRAAHE---SLSHREYQVFQLIAAGRSVKEIADQLEL 184 +S M L L A P +A E L+ RE IA G+S KEIA LE+ Sbjct: 123 EPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEV 182 Query: 185 SPNTVSTYRSRILEKTGASNDVGIAMYAVRHQL 217 + +TV + +L K S+ V IA+YAV H L Sbjct: 183 AESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 9/204 (4%) Query: 10 ILLCDDHRIVREGLKQILADTPDIEVAAECASGPEVLHSARVEAIDLVLLDIAIPQQDGL 69 I+L DDH +VR+GL+ L P +EV AE E L +A + IDL L+DI + +G+ Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 70 DVLRQIKQEMPRLPVLMLSTYPEKQYAARCYKLGAAGYLNKSTDPEQLMEAIRKAAGGGL 129 ++ P + VL+LS + + +Y + + GA GY+ K + ++ AI GG+ Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 130 YVSAQMAETLASGLAQRATAPQRAAHESLSHREYQVFQLIAAGRSVKEIADQLELSPNTV 189 Y SA +A L L R E L+ RE +V IA G S K+IA +L+LS TV Sbjct: 134 YYSAALARQLTQPLPPR---------ELLTQREREVLMHIANGESNKQIARELDLSVRTV 184 Query: 190 STYRSRILEKTGASNDVGIAMYAV 213 T+R I K + +AV Sbjct: 185 ETHRLNIKRKLNIDGQAELIKFAV 208 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 671,307 Number of extensions: 26446 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 23 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)