BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0232.p (207 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 391 e-110 gi|300311568|ref|YP_003775660.1| toluenesulfonate Zinc-independe... 139 2e-34 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 137 8e-34 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 135 3e-33 gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herb... 119 2e-28 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 391 bits (1005), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/199 (95%), Positives = 197/199 (98%) Query: 9 GSKAVTIGADVRDTAAINAAITKAVEQMGRIDVLINNAGALVKRAPLETVTDELFDEIIN 68 GSK++TIGADVRDT+AINAA+ KAV QMGRIDVLINNAGALVKRAPLETVTDELFD+IIN Sbjct: 55 GSKSITIGADVRDTSAINAAVAKAVAQMGRIDVLINNAGALVKRAPLETVTDELFDDIIN 114 Query: 69 INARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGGPGALIYAASKGFVSTITRGMAK 128 INARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGGPGALIYAASKGFVST+TRGMAK Sbjct: 115 INARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGGPGALIYAASKGFVSTLTRGMAK 174 Query: 129 ELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASDQ 188 ELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLAS+Q Sbjct: 175 ELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASEQ 234 Query: 189 MSGYVTGQIIDVNGGQYMP 207 MSGYVTGQIIDVNGGQYMP Sbjct: 235 MSGYVTGQIIDVNGGQYMP 253 >gi|300311568|ref|YP_003775660.1| toluenesulfonate Zinc-independent alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 139 bits (349), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 115/208 (55%), Gaps = 6/208 (2%) Query: 1 VAAEVRAAGSKAVTIGADVRDTAAINAAITKAVEQMGRIDVLINNAGALVKRAPLETVTD 60 V E++AAG +AV ADV A ++ + A+E G++D+++NNAG + P+ V + Sbjct: 45 VVEEIKAAGGRAVFAKADVSKRADMDQLLATALEHFGKLDIVVNNAGTTHRNRPMLEVEE 104 Query: 61 ELFDEIININARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGGPGALIYAASKGFVS 120 + FD + +N +S+ + +P R GGG IN+ S A PG Y SKG V Sbjct: 105 DEFDRVYAVNVKSIFLSAKTFVPYFRQVGGGAFINIASTAGIR-PRPGLTWYNGSKGAVI 163 Query: 121 TITRGMAKELLADKIRVNAVAPGVIMTPFQERFT----TPEQLEGFRKTIPMGRIGEPDE 176 T ++ MA EL DKIRVN V P + T F TPE + F TIPMGR P++ Sbjct: 164 TTSKSMAAELGPDKIRVNCVNPVISATGLLSEFMGVPDTPENRKKFVATIPMGRFSTPED 223 Query: 177 CSGAFLYLASDQMSGYVTGQIIDVNGGQ 204 + A LYL SD+ +VTG I+V+GG+ Sbjct: 224 IANACLYLGSDEAE-FVTGVCIEVDGGR 250 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 137 bits (344), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 125/199 (62%), Gaps = 3/199 (1%) Query: 9 GSKAVTIGADVRDTAAINAAITKAVEQMGRIDVLINNAGALVKRAPLETVTDELFDEIIN 68 G++ + + ADV D AA AA ++Q GRID+L+NNAG + + A L +T + +D I++ Sbjct: 52 GAQHLGLVADVTDKAACEAAAAAVLKQFGRIDILVNNAG-VTQPAKLLEITGKDYDRILD 110 Query: 69 INARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGG-PGALIYAASKGFVSTITRGMA 127 ++ R + ++AV+P M+AQ G+I+ ++SV+A+ GGG G Y+A+K V + R MA Sbjct: 111 VSLRGTLYMSQAVLPAMQAQQSGSIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAMA 170 Query: 128 KELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASD 187 +E IRVN + PG+I T + + E+ +TIP+GR+G PD+ G ++LASD Sbjct: 171 REFGPQGIRVNCITPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASD 230 Query: 188 QMSGYVTGQIIDVNGGQYM 206 +S Y TG +DVNGG + Sbjct: 231 -LSQYCTGVTLDVNGGMLI 248 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 3/199 (1%) Query: 9 GSKAVTIGADVRDTAAINAAITKAVEQMGRIDVLINNAGALVKRAPLETVTDELFDEIIN 68 GS+ + + ADV D A+ A ++Q GRID+L+NNAG LE +T +D I++ Sbjct: 52 GSQHLGLVADVTDKASCETAAAAILQQFGRIDILVNNAGITQPVKTLE-ITGADYDRILD 110 Query: 69 INARSVVAFTRAVIPVMRAQGGGNIINVTSVAARHGGG-PGALIYAASKGFVSTITRGMA 127 ++ R + ++AV+P MRAQ G+II ++SV+A+ GGG G Y+A+K V + R MA Sbjct: 111 VSLRGTLYMSQAVLPAMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMA 170 Query: 128 KELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASD 187 +E + IRVN++ PG+I T + T E+ +TIP+ R+G D+ GA ++L SD Sbjct: 171 REFGPEGIRVNSITPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSD 230 Query: 188 QMSGYVTGQIIDVNGGQYM 206 +S Y TG +DVNGG + Sbjct: 231 -LSQYCTGITLDVNGGMLI 248 >gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/208 (35%), Positives = 117/208 (56%), Gaps = 6/208 (2%) Query: 1 VAAEVRAAGSKAVTIGADVRDTAAINAAITKAVEQMGRIDVLINNAGALVKRAPLETVTD 60 V A+++AAG +A+ +G DV + ++GR+ L+NNAG L ++ LE ++ Sbjct: 46 VVAQIQAAGGRAIAVGGDVAREEDVLQLFATVDGELGRVTALVNNAGVLDHQSRLEDMSA 105 Query: 61 ELFDEIININARSVVAFTRAVIPVMRAQGGGN---IINVTSVAARHGGGPGALI-YAASK 116 E + ++ N + R + M + GG I+N++S+AA+ GG PG + YAASK Sbjct: 106 ERINRVLIANVTGSLLCAREAVKRMSTRHGGQGGAIVNLSSMAAKLGG-PGEYVDYAASK 164 Query: 117 GFVSTITRGMAKELLADKIRVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDE 176 G + T G+AKE+ A+ IRVNAV PG+I T +++ + +PM R G E Sbjct: 165 GAIDAFTIGLAKEVAAEGIRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAAE 224 Query: 177 CSGAFLYLASDQMSGYVTGQIIDVNGGQ 204 + A L+L S++ S Y TG IDV+GG+ Sbjct: 225 VANAILWLLSEEAS-YATGTFIDVSGGR 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 642,471 Number of extensions: 26817 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 48 Length of query: 207 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,236,335 Effective search space: 155778210 Effective search space used: 155778210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)