BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0231.p (239 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312613|ref|YP_003776705.1| transcription regulator protein... 421 e-119 gi|300310702|ref|YP_003774794.1| transcription regulator protein... 92 4e-20 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 87 2e-18 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 81 1e-16 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 80 1e-16 >gi|300312613|ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 421 bits (1082), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/239 (94%), Positives = 235/239 (98%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL Sbjct: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHID 120 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLE+LFDARLIIETGVAALAATHI+ Sbjct: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 Query: 121 DAELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRS 180 DAEL RLARNVEDEARLLSDPAAF+AADVEFHEAIIEACNNPFLQS+AGSLYMLGKKSRS Sbjct: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 Query: 181 ITSRIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSAGRSQNESVLD 239 ITSRIP+TLERSLQDHR ILDALKARDP +ASEAMR+HL+RVRDAYRSAGR++NESV D Sbjct: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 >gi|300310702|ref|YP_003774794.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 92.0 bits (227), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 4/233 (1%) Query: 4 DPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGL 63 + I ++ + ++V +RL+ I G QLP ER+L GVGRPAVREA++ + G Sbjct: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 Query: 64 LRIRQGEGTFVSSLETRELLEPL----EMIIDLNPGTLEALFDARLIIETGVAALAATHI 119 + I GE V L+ + + ++ P L+ L +AR+ +ET A +AA Sbjct: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 Query: 120 DDAELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKKSR 179 ++ RL + V + D F D+ FH I + NP S+ SL+ + Sbjct: 123 TPEQIERLRQTVTVHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 Query: 180 SITSRIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSAGRS 232 + R P E +L +H I+DA+ A D A+EAMR HL+R + YR G+ Sbjct: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 112/241 (46%), Gaps = 24/241 (9%) Query: 9 KSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQ 68 +S+S++V L MI +G L P +LP E E+ GV R VREAI L GL+ R Sbjct: 18 QSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRH 77 Query: 69 GEGTFVSSLETRELLEPLEMIIDLNPGTLE------ALFDARLIIETGVAALAATHIDDA 122 G GTFV LE ++ I+++P T+ AL + R+ +ET A LAA + Sbjct: 78 GIGTFV--LEAKKGGN-----INIDPATITTMRDLLALLELRISLETETAGLAAARRTEE 130 Query: 123 ELARLARNVEDEARLLSDPAAFSAA-DVEFHEAIIEACNNPFLQSVAGSLYMLGKKSRSI 181 +L + R D R + D FH AI A N + + L M + I Sbjct: 131 QLQEI-REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRI 189 Query: 182 TS------RIPSTLERSLQDHRDILDALKARDPHQASEAMRNHLLRVRDAYRSAGRSQNE 235 + + S L+R ++H DI +A+ D A AMRNHL R+ R R+Q E Sbjct: 190 NTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLR---RAQQE 246 Query: 236 S 236 + Sbjct: 247 A 247 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 19/228 (8%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 M + I + + Q++ +L +I G +LP ER+LA LGV RP++REA+ L + Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNP--GTLEALFDARLIIETGVAALAATH 118 G + +R G G +V RE IDL+ G LE L AR +IE VA AA H Sbjct: 61 EGHIEVRMGSGIYVCPPVQRERR------IDLSSEEGPLE-LIRAREMIEGEVAYAAAQH 113 Query: 119 IDDAELARLARNVEDEARLLSDPAAFS---AADVEFHEAIIEACNNPFLQSVAGSLY--M 173 ++A + E A ++S+ A AD FH + EA N L + L+ Sbjct: 114 GSKQQIAAVE---EAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDAR 170 Query: 174 LGKKSRSITSRIPST--LERSLQDHRDILDALKARDPHQASEAMRNHL 219 LG + + S T + ++ +H +++AL+ R+P QA AMR H+ Sbjct: 171 LGPLFKRLHSHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHM 218 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 17/228 (7%) Query: 2 SFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALL 61 S P + + Q+A RL T++ +LPPER LA LGV RP++REA+ L L Sbjct: 13 SQKPTDSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELE 72 Query: 62 GLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPG-TLEALFDARLIIETGVAALA---AT 117 G + IR G G +++ E E D G +L + AR I E + AL A Sbjct: 73 GRVEIRMGSGVYLTQAAPPGQQE--EPAPDKEMGNSLSDIMGARAIFEGAIVALVAPLAK 130 Query: 118 HIDDAELARLARNVEDEARLLSDPAAFSAADVEFHEAIIEACNNPFLQSVAGSLYMLGKK 177 D L + +E E + PA A D +FH I N L LY ++ Sbjct: 131 PRDIKALRAIYDTMERECQAGQSPA---ATDRDFHIRIARMTGNDVLVQTVARLY--DER 185 Query: 178 SRSITSRIPSTLE------RSLQDHRDILDALKARDPHQASEAMRNHL 219 I++++ E +L +HR+IL+A++ARD QA AM+ HL Sbjct: 186 QDPISAKLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHL 233 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 655,825 Number of extensions: 24176 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 15 Length of query: 239 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 157 Effective length of database: 1,231,600 Effective search space: 193361200 Effective search space used: 193361200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)