BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0214.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312410|ref|YP_003776502.1| dienelactone hydrolase [Herbasp...    59   4e-10

>gi|300312410|ref|YP_003776502.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 101/243 (41%), Gaps = 47/243 (19%)

Query: 7   AANEKVSITGRLTFPDAVTSPVPAVVILHGSSG------------VNPG----------- 43
           +A+ +  +T  L F  A   P PAVV+LHG +G            + P            
Sbjct: 77  SADGRTELTAYL-FTPAGAGPHPAVVMLHGRAGPYSSRINGDCTRIGPALPSPCDASTLS 135

Query: 44  --EKVWAQRLNAMGYASFVVDSFTGRGVSN----------TEADQTQLSMSAGIADAYFA 91
              + WA      GY + +VDS+  RGV++            A+  +L++     DA  A
Sbjct: 136 QRHQAWAAYWIERGYLALLVDSYGPRGVAHGFGRHTHGAPERAEVNELTVRP--LDAEGA 193

Query: 92  LRMLAADPRIDRKKISVMGFSRGGIAALYSALDPFRRAVIDDDLHFAAHIAFYPGCG--- 148
           L  LA    ++  +I + G+S G   AL        R +      FA  + FYPGCG   
Sbjct: 194 LAWLAPRSDVNPARILLQGWSNGASTALNVMQRQASR-LGGTAPSFAGAMVFYPGCGPQA 252

Query: 149 IHYASAHLDGAPILMLLGGKDNYTPAAPC---VEYADALRKQGAQVTLKTYPDAYHGFDR 205
           +  +S  LD  P+ +LLG  D       C   +  A  +R+  + V +  YP A H FD 
Sbjct: 253 LLSSSPELD-RPVQVLLGAADQEVSPQRCLRVLRQAIPMRRNSSPV-VTLYPGATHDFDD 310

Query: 206 PTR 208
           P R
Sbjct: 311 PGR 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 952,058
Number of extensions: 41845
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)