BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0212.p (272 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 147 6e-37 gi|300311868|ref|YP_003775960.1| LysR family transcription regul... 142 4e-35 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 137 1e-33 gi|300311929|ref|YP_003776021.1| LysR family transcription regul... 128 6e-31 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 119 2e-28 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 147 bits (372), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/259 (35%), Positives = 143/259 (55%), Gaps = 6/259 (2%) Query: 1 VGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSG 60 V V LE L+ LL R RR+ LT G A+Y+ CVR+L +L E + P G Sbjct: 33 VTTLVQGLESMLQVRLLNRTTRRISLTPDGAAYYERCVRILADLDETEQSFRNVTRGPQG 92 Query: 61 RLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWP 120 RLR+D+PA+ GRL + +L F ++P + + DR VDLV+E +D V+RI G++ Sbjct: 93 RLRIDVPASVGRLMLLPNLCDFYTRYPDIELMMGMGDRPVDLVQEAVDCVIRI--GELQD 150 Query: 121 ATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHDAVLYARA-DGSSSPW-LIKDGD 178 +++ +G + V CAAP+YL R G P T+E+LQ H AV Y + G + W + +G Sbjct: 151 SSMVARRIGTFQTVTCAAPAYLERHGVPHTIEDLQQHKAVHYFSSRTGRTIDWDFVVEGV 210 Query: 179 QPVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQALREGSLVAILPAHVTQGLP 238 V+ + G++ + +A+A V G G+ Q ++V + + EG LV +L +P Sbjct: 211 TREVKMN--GKLAVNEADAYVECALQGFGMVQAPLYMVTRHIDEGRLVEVLSQWKPAPMP 268 Query: 239 LHIVWQRSREHSAKVRAAV 257 + +V+ +R S KVRA V Sbjct: 269 ISVVYLHNRHLSPKVRAFV 287 >gi|300311868|ref|YP_003775960.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 142 bits (357), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 138/256 (53%), Gaps = 6/256 (2%) Query: 1 VGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSG 60 V A+ +LE+ L LLQR RRV+LT G+AFY+ +LDE +S M A SG Sbjct: 33 VSLAIQQLEQMLGTRLLQRTTRRVQLTADGEAFYRRSRELLDEFESLRGMFHDGAQALSG 92 Query: 61 RLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWP 120 RLRVDM + R + +L +F +KHPQ+ ++S +DR VDLV EG D V+R G D Sbjct: 93 RLRVDMSSAMAREVVLPALPSFLDKHPQLEIELSASDRRVDLVAEGFDCVLRTGTLD--D 150 Query: 121 ATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHDAVLYARADGSSSP-WLIKDGDQ 179 ++L +GH + CA+P YL R G P+TLE+L H V Y + G SP W DG Q Sbjct: 151 SSLVARPIGHLVQINCASPEYLRRYGTPQTLEDLAQHRLVHYRQVLGGRSPGWEWFDGQQ 210 Query: 180 PVVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVE--QALREGSLVAILPAHVTQGL 237 A G I + E AA AGLG+ QL + Q L G +V +LP + + Sbjct: 211 TRSLPMA-GSITVNSTETYYAACLAGLGLIQLPLVGAQKRQMLDGGHVVEVLPQYRPAPM 269 Query: 238 PLHIVWQRSREHSAKV 253 P+ +++ R A++ Sbjct: 270 PVSLLYASRRHVPARL 285 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 138/256 (53%), Gaps = 6/256 (2%) Query: 1 VGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSG 60 V + V LE RL L+QR RR+ LT+AG + + C +++ L+ A+D+L+S P+G Sbjct: 33 VSRTVLELEARLGSRLMQRTTRRLSLTEAGALYLERCKQIVAALEEADDLLSSGSAKPTG 92 Query: 61 RLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWP 120 LR++ P TFG L F E+HP+++ ++ +DR VD+++EG D+ +RI + Sbjct: 93 LLRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDRIVDIIDEGYDMAIRI--ARLSD 150 Query: 121 ATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHDAVLYARADGSSSPWLIKDGDQP 180 +TL + L L CA+P+YL G P EL H + Y+ + S W + P Sbjct: 151 STLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTISYSY-NQSKDEWQFNGPEGP 209 Query: 181 V-VRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQALREGSLVAILPAHVTQGLPL 239 V VR R+ + ++ V A G+GI + T++++Q LR G LV+IL + L + Sbjct: 210 VSVR--VSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYLRSGQLVSILGDYGAPELGI 267 Query: 240 HIVWQRSREHSAKVRA 255 + V+ AK+RA Sbjct: 268 YAVYPSRAHLPAKMRA 283 >gi|300311929|ref|YP_003776021.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 137/260 (52%), Gaps = 6/260 (2%) Query: 1 VGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSG 60 V ++++RLE RL L R R++ LT G+ + C + L+++ AE +L + PSG Sbjct: 38 VSRSISRLESRLGVRLFARTTRQIRLTREGELYRDQCQQALEQIADAERILTGQQKVPSG 97 Query: 61 RLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWP 120 LR+ + + R + L F + +PQ+ ++S +R VD VEEG D+ +R+G V P Sbjct: 98 LLRISVGTPYAHYRLLPLLPRFQQAYPQIEVELSIANRVVDFVEEGYDLAIRLG---VPP 154 Query: 121 -ATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHDAVLYA-RADGSSSPWLIKDGD 178 + L L L AAP+YLARRG+PR++ EL+ HD + + + G + PW+ KD Sbjct: 155 DSRLIAHTLEEATLGLFAAPAYLARRGQPRSIAELEQHDCIQFILPSSGRAMPWIFKDAQ 214 Query: 179 QPVVRQHAEGRI-ILGQAEAQVAAVQAGLGIAQLATWVVEQALREGSLVAILPAHVTQGL 237 + H + R I V AG G+ Q+ ++ + A+R G LV +L + Sbjct: 215 GRDMDFHFKSRQRIHDDVLGCVNWAIAGGGLFQIYHFIADAAVRRGELVEVLQQAGYRTR 274 Query: 238 PLHIVWQRSREHSAKVRAAV 257 I++ +R SA+VRA V Sbjct: 275 RFSILYPHNRHLSARVRAFV 294 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 4/257 (1%) Query: 1 VGKAVARLEERLKRPLLQRGRRRVELTDAGDAFYQVCVRVLDELKSAEDMLASDELAPSG 60 +G+ + LEERL LLQR R++ LT+ G AF + C R+L +L+ AE ++ SG Sbjct: 33 IGRRLDALEERLGVKLLQRTTRKIVLTNEGAAFLEDCQRILADLEDAESAVSERSARASG 92 Query: 61 RLRVDMPATFGRLRGMDSLLAFAEKHPQVTPQVSFTDRFVDLVEEGLDVVVRIGGGDVWP 120 +L + PA FGR L +F +H VT ++ DR D++ EG+DV +RI + Sbjct: 93 QLLISAPAGFGRQHVAPLLPSFLAEHRDVTLTLNLNDRIADVIGEGIDVAIRI--ATLTD 150 Query: 121 ATLGYTCLGHEELVFCAAPSYLARRGEPRTLEELQIHDAVLYARADGSSSPWLIKDGDQP 180 + L L V AAP+YL R G P++ +EL H+ L ++GS W ++ + Sbjct: 151 SNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHN-CLAMSSEGSQRGWTLRQSGKV 209 Query: 181 VVRQHAEGRIILGQAEAQVAAVQAGLGIAQLATWVVEQALREGSLVAILPAHVTQGLPLH 240 V + G ++ E AG G+A + W V A+ G LV +L ++ Sbjct: 210 SVYK-VGGNMVCNDGEVLHNWALAGRGLAWRSMWEVGAAIEAGELVTVLDKFAAPAPSIY 268 Query: 241 IVWQRSREHSAKVRAAV 257 V+ + R ++RA V Sbjct: 269 AVFAQRRHLPLRIRAFV 285 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 822,344 Number of extensions: 31646 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 28 Length of query: 272 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 188 Effective length of database: 1,222,130 Effective search space: 229760440 Effective search space used: 229760440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)