BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0210.p (207 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311567|ref|YP_003775659.1| major facilitator superfamily p... 137 4e-34 gi|300313734|ref|YP_003777826.1| permease [Herbaspirillum serope... 130 8e-32 gi|300313738|ref|YP_003777830.1| major facilitator superfamily p... 127 9e-31 gi|300311164|ref|YP_003775256.1| major facilitator superfamily p... 118 4e-28 gi|300313516|ref|YP_003777608.1| major facilitator superfamily p... 114 4e-27 >gi|300311567|ref|YP_003775659.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 435 Score = 137 bits (346), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 106/178 (59%), Gaps = 2/178 (1%) Query: 18 RVLALALIYFGTSAGLYTLGLWAPLMIREFGFT-PFQTGLLSGVPSVVAVVAMVWWARHS 76 RV ALIYF GLY + W P +I+ G + P GLL+ +P A AMV R + Sbjct: 251 RVWLGALIYFCFVMGLYGVSFWLPTIIKATGVSDPLNVGLLTAIPYAFAAAAMVLIGRSA 310 Query: 77 DRSGERTWHVVIPCVVACIGFVLAGN-AMTALFVVLSLVVVNVGISSAKAPLWAMPSTFL 135 D ER WHV IP + CIG +L+ + SL + +VGI + W++P+ FL Sbjct: 311 DARRERRWHVAIPAFIGCIGLLLSTQYGHNTTLAMASLTLASVGILTTLPLFWSLPTAFL 370 Query: 136 SGAGAAAGIAMINSLGNLGGFVGPFAIGWLKNRTGGYAAGLYVVAATLAVSAVVTLLL 193 SG AAAGIA+INSLGNL GFV PF +GWLK+ T AG+YV+AA+L + ++TL L Sbjct: 371 SGTAAAAGIALINSLGNLAGFVSPFLVGWLKDATQSTNAGMYVLAASLVIGGLLTLTL 428 >gi|300313734|ref|YP_003777826.1| permease [Herbaspirillum seropedicae SmR1] Length = 431 Score = 130 bits (327), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 77/189 (40%), Positives = 108/189 (57%), Gaps = 1/189 (0%) Query: 11 WSALKDLRVLALALIYFGTSAGLYTLGLWAPLMIREFGFTPFQTGLLSGVPSVVAVVAMV 70 W V +AL+ SA L +W P +++ FG + QTGL++ +P ++A V MV Sbjct: 240 WKLFSQPHVWGMALVCACASAAGSVLNVWQPQLLKSFGLSVMQTGLVNSIPYLIASVLMV 299 Query: 71 WWARHSDRSGERTWHVVIPCVVACIGFVLAGNAMTALFVVLSLVVVNVGISSAKAPLWAM 130 WW RHSDR+GER WH IP ++ G LA A + VVL L +V +G S K P WAM Sbjct: 300 WWGRHSDRTGERRWHTAIPLMLIGGGLALASLANSLAPVVLLLTMVLIGAYSFKGPFWAM 359 Query: 131 PSTFLSGAGAAAGIAMINSLGNL-GGFVGPFAIGWLKNRTGGYAAGLYVVAATLAVSAVV 189 S++L+ AAAG+A IN++ NL GG + GW+K+ TG YA L + VS + Sbjct: 360 ASSWLATGSAAAGLAGINAVSNLIGGGLMVNVYGWVKDATGSYAMALLPMVGLSVVSVGI 419 Query: 190 TLLLARNTR 198 L L+R +R Sbjct: 420 LLFLSRKSR 428 >gi|300313738|ref|YP_003777830.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 445 Score = 127 bits (318), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 112/202 (55%) Query: 6 HTASAWSALKDLRVLALALIYFGTSAGLYTLGLWAPLMIREFGFTPFQTGLLSGVPSVVA 65 H A + RV ALA F G ++GLW P +IREFG Q GL++ +P +V Sbjct: 244 HGNKLKDAFTNWRVFALAGANFCGIIGSLSIGLWLPQIIREFGLPSHQVGLVAAIPYLVG 303 Query: 66 VVAMVWWARHSDRSGERTWHVVIPCVVACIGFVLAGNAMTALFVVLSLVVVNVGISSAKA 125 VAM WAR ++RS R + V V+A + ++ T L +L++ V I S +A Sbjct: 304 AVAMTLWARLANRSERRLFFVAGAIVLAALSLGISAFLHTPLLKMLAITVAVASILSFQA 363 Query: 126 PLWAMPSTFLSGAGAAAGIAMINSLGNLGGFVGPFAIGWLKNRTGGYAAGLYVVAATLAV 185 WA+PS FL+G AA G+A+I S+GNLGGFVGP IG+++ T G+ L VA L + Sbjct: 364 TFWAIPSGFLTGRAAAGGLALIVSIGNLGGFVGPSVIGFIREATQGFTYPLIFVAGALLL 423 Query: 186 SAVVTLLLARNTRRAAVVEQGA 207 AV+TL L +R ++ A Sbjct: 424 GAVITLALGDPSRVPPTSKETA 445 >gi|300311164|ref|YP_003775256.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 437 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/194 (40%), Positives = 111/194 (57%), Gaps = 2/194 (1%) Query: 5 GHTASAWSALKDLRVLALALIYFGTSAGLYTLGLWAPLMIREFGFT-PFQTGLLSGVPSV 63 G S A + RV A +YF +G T+ WAP +I+E G Q GL+S +P + Sbjct: 243 GKHFSFKDACTNYRVWICAAVYFCVVSGNATIAFWAPSIIKEIGVKGNLQIGLISAIPFI 302 Query: 64 VAVVAMVWWARHSDRSGERTWHVVIPCVVACIGFVLAGNAM-TALFVVLSLVVVNVGISS 122 +AM+W HSD++GER H I ++ACIG V G + A + SL + +GI + Sbjct: 303 AGTLAMIWNGFHSDKTGERRLHSAIATLIACIGLVATGMTLGNATLALCSLTLAAIGILA 362 Query: 123 AKAPLWAMPSTFLSGAGAAAGIAMINSLGNLGGFVGPFAIGWLKNRTGGYAAGLYVVAAT 182 A W++P FL+G AA GIA+INS+GNL GFV P+ IG LK TG ++GLY VAA Sbjct: 363 AFPVFWSIPGAFLAGTAAAGGIALINSIGNLAGFVAPYMIGALKTSTGSLSSGLYFVAAL 422 Query: 183 LAVSAVVTLLLARN 196 V++ + ++ R Sbjct: 423 ELVASFLVVVFIRK 436 >gi|300313516|ref|YP_003777608.1| major facilitator superfamily permease [Herbaspirillum seropedicae SmR1] Length = 437 Score = 114 bits (286), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 8/183 (4%) Query: 14 LKDLRVLALALIYFGTSAGLYTLGLWAPLMIREFGFT-PFQTGLLSGVPSVVAVVAMVWW 72 +KD RV + LIYF G Y L LW P +++ G + GLLS +P A++AM Sbjct: 249 VKDARVWLMCLIYFSFVMGQYGLTLWMPTLVKATGVKGNLEIGLLSAIPFGCAIIAMNLI 308 Query: 73 ARHSDRSGERTWHVVIPCVVACIGFV----LAGNAMTALFVVLSLVVVNVGISSAKAPLW 128 R +DR ER WH+VIP ++ +GFV A N + + SL + G+ + W Sbjct: 309 GRSADRMRERRWHLVIPALMGGVGFVGAALFADNTAVS---IASLSLAAAGVLTCAPLFW 365 Query: 129 AMPSTFLSGAGAAAGIAMINSLGNLGGFVGPFAIGWLKNRTGGYAAGLYVVAATLAVSAV 188 ++P+ FLSGA AA GIA INS+GNL GFV P+ IG+LK+ T A G+Y++A L V ++ Sbjct: 366 SLPTAFLSGAAAAVGIAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYMLAVMLVVGSI 425 Query: 189 VTL 191 TL Sbjct: 426 ATL 428 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 476,264 Number of extensions: 14887 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 9 Length of query: 207 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,236,335 Effective search space: 155778210 Effective search space used: 155778210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)