BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0208.p (323 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 236 2e-63 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 213 1e-56 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 190 1e-49 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 173 2e-44 gi|300310469|ref|YP_003774561.1| LysR family transcription regul... 170 2e-43 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/300 (39%), Positives = 190/300 (63%), Gaps = 5/300 (1%) Query: 1 MQDTVLPADLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMM 60 M +T L DLR F V+A S + + RE+G + A +SK + L+E GV L +RTTR ++ Sbjct: 1 MNNTPLLEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVV 60 Query: 61 LTPEGELYLEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTR 120 +T EG E ARRILD ++++ E + S+KR P GLL+++ + G GR V+P++S+F + Sbjct: 61 MTEEGGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 120 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 HP++ +QL+L L + D+ IR G + + ++R+ + R+LCASP YL++ G+ Sbjct: 121 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGL 180 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALD 240 P L +H C+ IR+ ++++G+W++ G ETVK+ G L +N GEI +WA+D Sbjct: 181 PADLAALRQHQCLVIRERNQSFGIWRMMGPKG----VETVKVSGMLASNHGEIIHQWAVD 236 Query: 241 GHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIAREL 300 GHGI++R+ WD+ L++GRLV+VLP + AD+ AVY + + S +VR V F+ + L Sbjct: 237 GHGIILRSAWDVADSLKRGRLVRVLPQYYQ-EADLCAVYPLQLKNSAKVRECVRFLQKHL 295 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 167/291 (57%), Gaps = 5/291 (1%) Query: 13 FSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMMLTPEGELYLEHA 72 F+ +A GSLSAA R G+ A + + L +E R GV L+ RTTR+++LT EG +LE Sbjct: 10 FAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGAAFLEDC 69 Query: 73 RRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTRHPQVSVQLQLSV 132 +RIL +++ + R G L ++A GFGR HVAP++ F+ H V++ L L+ Sbjct: 70 QRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTLTLNLND 129 Query: 133 MPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGMPQTPHDLSKHNC 192 + + DV IR D+ +V+ +LA N R++ A+P YLRR G PQ+P +L +HNC Sbjct: 130 RIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHNC 189 Query: 193 VGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALDGHGILMRAEWDI 252 + + G W L S K K+ GN+ NDGE+ WAL G G+ R+ W++ Sbjct: 190 LAMSSEGSQRG-WTLRQ----SGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMWEV 244 Query: 253 RSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIARELAEP 303 + +E G LV VL + P I+AV++QR+ L R+R+FVDF+ A+P Sbjct: 245 GAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQP 295 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 165/294 (56%), Gaps = 5/294 (1%) Query: 9 DLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMMLTPEGELY 68 ++ F +A GS A LG++ AAVS+ + +EAR G L+ RTTRR+ LT G LY Sbjct: 6 EIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGALY 65 Query: 69 LEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTRHPQVSVQL 128 LE ++I+ ++E +LL S +P GLLR+NA L FG H+AP+ F+ RHP++S+ + Sbjct: 66 LERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISLDI 125 Query: 129 QLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGMPQTPHDLS 188 LS + ++ +D+ IR D+ +V R+L S + +CASP YL G P PH+L+ Sbjct: 126 TLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELA 185 Query: 189 KHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALDGHGILMRA 248 +H + +++ W+ + G +V++ L N+G+ V+ AL G GI + Sbjct: 186 QHQTISYSY-NQSKDEWQFNGPEGPV----SVRVSSRLHVNNGDSCVQAALGGIGITRQP 240 Query: 249 EWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIARELAE 302 + I YL G+LV +L + P I+AVY R L ++R+ +DF+ A+ Sbjct: 241 TFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQ 294 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 159/294 (54%), Gaps = 5/294 (1%) Query: 9 DLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMMLTPEGELY 68 DL F A GSLSAA R+ +T A S + +E G L+ R+TR + LTP+GE Y Sbjct: 6 DLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGERY 65 Query: 69 LEHARRILDQIDELSELLGSSKRRPEGLLRVNATLGFGRSHVAPVISKFVTRHPQVSVQL 128 L+HAR +L +++ + + +R G L ++A FGR+ + + +F +HP VS+Q+ Sbjct: 66 LQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPAVSLQV 125 Query: 129 QLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLA-SNARLLCASPDYLRRRGMPQTPHDL 187 +S + DV IR+ P D+ +VA LA N R+LCASPDYL R G P++P DL Sbjct: 126 HVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGRPRSPADL 185 Query: 188 SKHNCVGIRQGDEAYGVWKLSSGSGASRKTETVKIRGNLTTNDGEIAVKWALDGHGILMR 247 +HNC+ D + W + V++ G+ T +DGE+ +WA++G GI + Sbjct: 186 RQHNCLRYVLSDTLHSQWNFFKDD----EPVQVQVSGDRTCDDGELVRRWAVNGRGIAYK 241 Query: 248 AEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIARELA 301 + D+ + L GRL +L ++ + + V + R +S VR+ + + +A Sbjct: 242 SRLDVLADLRNGRLEALLEDYEGEPSPLHLVCTHRMCVSPTVRALRELLGERIA 295 >gi|300310469|ref|YP_003774561.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 158/311 (50%), Gaps = 13/311 (4%) Query: 9 DLRFFSVLAMAGSLSAAGRELGLTTAAVSKHLTLMEARAGVPLVNRTTRRMMLTPEGELY 68 D++ L + SL+ A R L LT AV+ L +E R GV L NR R LT EG+ Sbjct: 6 DMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTDEGQRL 65 Query: 69 LEHARRILDQIDELSELLGSSKRRPE--------GLLRVNATLGFGRSHVAPVISKFVTR 120 ++ A IL++I+ ++ + R E G LRV A GFGR +VAP++ Sbjct: 66 VQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLVRDLHRN 125 Query: 121 HPQVSVQLQLSVMPPPLTEDSFDVCIRFGEPPDTRVVARRLASNARLLCASPDYLRRRGM 180 HP++++ L L+ P + D I G + V LA N R LCASP RR Sbjct: 126 HPRLAISLLLAESPLAAASGA-DAIISIGRVKGSSWVGHFLAPNERFLCASPALARRMNR 184 Query: 181 PQTPHDLSKHNCVGIRQGDEAYGVWKLSSGSGASRKTE---TVKIRGNLTTNDGEIAVKW 237 + P +L+ + + +R+ D+ + + A R+T TVK+ G L++NDG I W Sbjct: 185 ARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTITRDW 244 Query: 238 ALDGHGILMRAEWDIRSYLEQGRLVQVLPGWQTPNADIFAVYSQRQQLSTRVRSFVDFIA 297 ALDG G + R+EWD L G L +VLPGWQ A I A+ RQ L+ R R F++ Sbjct: 245 ALDGEGFVARSEWDCAHLLTDGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFLEAAK 304 Query: 298 RELAEPSPKQR 308 R +P P +R Sbjct: 305 RAF-QPIPWRR 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,042,195 Number of extensions: 44351 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 59 Length of query: 323 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 238 Effective length of database: 1,217,395 Effective search space: 289740010 Effective search space used: 289740010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)