BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0205.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310738|ref|YP_003774830.1| transcription regulator protein... 189 2e-49 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 81 8e-17 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 74 1e-14 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 69 4e-13 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 59 3e-10 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 189 bits (481), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/221 (47%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 15 AGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGHF 74 A L + VY L+DDI++FRLLPGD F E ++A+R VSRTP+R+AL RLQ EG + F Sbjct: 6 ANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGF 65 Query: 75 RNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQLVAEQGAIWQCAPGDR 134 R GW+V PID R +LY+LR +LE+ A+ KLCS A A QL AIW P R Sbjct: 66 RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQL----NAIWLAEPDAR 121 Query: 135 LPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTYAEHR 194 D + VA LDEAFH LV AAGN E V+ ++ ++RI+RRLDF ID TY EH Sbjct: 122 QTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHG 181 Query: 195 AILDAIARSDAALAGELIARHIEDSHTVVERLTIARLEQVR 235 IL IA+ A A L+ HI S V ++TI L + R Sbjct: 182 KILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEAR 222 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 81.3 bits (199), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 96/193 (49%), Gaps = 6/193 (3%) Query: 25 SLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRGHFRNGWEVVPID 84 S+ + I +L PG E +AE VSRTP+REAL++L S G+V R G V I Sbjct: 14 SIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIG 73 Query: 85 LARFASLYELREMLELHAV-RKLCSPRIAPAVRQQLVAEQGAIWQCAPGDRLPDGLAVAA 143 + ++E+ M E A+ +L + R+ PA +L+A A Q A PD A Sbjct: 74 PQQLIEMFEV--MAEFEAMCGRLAARRMTPAEHAELLAAHQA-CQAARDANDPD--AYFY 128 Query: 144 LDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAYGDCIDDTYAEHRAILDAIARS 203 L+EAFH + + N R L +LR RRL D + ++ EH+A++DAI Sbjct: 129 LNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAIISG 188 Query: 204 DAALAGELIARHI 216 DA +L+ HI Sbjct: 189 DAEKTVDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 13/218 (5%) Query: 13 RRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGLVRG 72 R L++ V+ ++ I + PG + +E ++A +SR P+REA+ RL+ + L+ Sbjct: 12 REGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVR 71 Query: 73 HFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPAVRQQL-----VAEQGAIW 127 G VV + L L+++RE LE A R L + R++ A +L E+ + Sbjct: 72 VPHVGARVVSLTLEGLVELFQIRESLEGMACR-LAAQRMSRAELDELRRVLDTHEKDEAF 130 Query: 128 QCAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDF-AYGDCI 186 Q G +G D FH ++QA+GN + QL M R+ + A Sbjct: 131 QAGRGYYQQEG------DYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRP 184 Query: 187 DDTYAEHRAILDAIARSDAALAGELIARHIEDSHTVVE 224 +AEH ILDA+A D LA L+ RHI S +E Sbjct: 185 RQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIE 222 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 18/215 (8%) Query: 10 LATRRAGKLTDTVYASLRDDIYAFRLLPGDRFAENDVAERLQVSRTPVREALMRLQSEGL 69 ++T + K + + + + I A +L PG R E +A+ +VSRT VREAL L + G+ Sbjct: 1 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI 60 Query: 70 VRGHFRNGWEVVPIDLARFASLYELREMLELHAVRKLCSPRIAPA-------VRQQLVAE 122 V R GW V+ A+ +E R ++EL +R+ R+ P +R+ + E Sbjct: 61 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQ---ARLRPVGDTAIGQLREHIARE 117 Query: 123 QGAIWQCAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLANQLRIMRRLDFAY 182 + AI G R + L FH L + GN R L + + L Sbjct: 118 EAAIAGADVGAR-------SYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAML-HQS 169 Query: 183 GDCIDDTYAEHRAILDAIARSDAALAGELIARHIE 217 + +D+ +EH I++A+ R D A +L+ H++ Sbjct: 170 SEQAEDSCSEHVLIVEALERGDLEQAEQLMHDHLQ 204 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 105/233 (45%), Gaps = 40/233 (17%) Query: 16 GKLT--DTVYASLRDDIYAFRLLPGDRF-AENDVAERLQVSRTPVREALMRLQSEGLVRG 72 GK+T D V + L I A P R +E ++ ER VSRT +REA+ RL+SEGLV Sbjct: 26 GKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGS 85 Query: 73 HFRNGWEVVP------------IDLAR-----FASLYELR-----EMLELHAVRKLCSPR 110 +G V+P +D R + ELR EM L A R+ + Sbjct: 86 RRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQN 145 Query: 111 IAPAVRQQLVAEQGAIWQCAPGDRLPDGLAVAALDEAFHCALVQAAGNPEADTVYRQLAN 170 +A Q + E A A D +P+ D AFH A+ A+ NP ++ + L+ Sbjct: 146 LAIQQALQAIDEAAA----AGRDGVPE-------DFAFHAAISNASHNPLYTSLVQFLSQ 194 Query: 171 QL----RIMRRLDFAYGDCIDDTYAEHRAILDAIARSDAALAGELIARHIEDS 219 L R+ R + + + AEH A+ +AI+ DA A RH+E+S Sbjct: 195 FLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENS 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 858,639 Number of extensions: 36481 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 11 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)