BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0198.p (333 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic pro... 663 0.0 gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A... 65 7e-12 gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 60 2e-10 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 57 3e-09 >gi|300312620|ref|YP_003776712.1| ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/333 (98%), Positives = 331/333 (99%) Query: 1 MKLARILAPAITAAALAFSGNALALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI 60 MKLARILAPAITAAALAFSGNA ALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI Sbjct: 1 MKLARILAPAITAAALAFSGNAFALEKFKIGYLRVMDDAQAMAAYEAGLYKKYGLDVELI 60 Query: 61 EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK 120 EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK Sbjct: 61 EFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALVAREDSGINK 120 Query: 121 VADLKGKTLASQAEGSTADTVLKGVVLRDAGVKPDDVNVMGVSPQVAVQSLVGKRVDAAF 180 VADLKGKTLASQAEGSTADTVLKGVVLRDAG+K DDVNVMGVSPQVAVQSLVGKRVDAAF Sbjct: 121 VADLKGKTLASQAEGSTADTVLKGVVLRDAGIKADDVNVMGVSPQVAVQSLVGKRVDAAF 180 Query: 181 LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKRDAVWKSLDAQRDAITLL 240 LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKR+AVWKSLDAQRDAITLL Sbjct: 181 LFEPQARIAQLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKREAVWKSLDAQRDAITLL 240 Query: 241 QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA 300 QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA Sbjct: 241 QKKPAEASKLIAGYFIAEPTLKTLKHGEMLREDVIRDAIKSQTFTPKISKKDQDRMQEIA 300 Query: 301 DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL 333 DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL Sbjct: 301 DILQSQGSLKTRDGKPFDVNSITDLSWQNARKL 333 >gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 15/207 (7%) Query: 52 KYGLDVELIEFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGYHALV 111 K G+ V+ F G D+++ I+ G+LD G A++ + GA + VV G G LV Sbjct: 49 KCGIKVDEKVFAKGPDVMQGILAGELDVGTTASEAAISGRANGAPIYVVAGFAKGGARLV 108 Query: 112 AREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGVKPDDVNVMGVSPQVAVQSL 171 A +DSGI V DLKGK + G VL L G+ DV ++ ++ Q+L Sbjct: 109 AGKDSGIKSVKDLKGKKVGVTRGG--IHEVLLDAELGQNGLSAKDVTIVYLAFADLNQAL 166 Query: 172 VGKRVDAAFLFEPQARIA-------QLIAPVKQVYEIGEVWPFPCMVVITSGETLKKKRD 224 +GK +DA EPQ+ A +++ P IGE P+ MV+ + + +KR Sbjct: 167 LGKNIDAMMQSEPQSSQAINKGFGVEVMKPYDT--PIGE--PYRTMVM--TEKFYNEKRP 220 Query: 225 AVWKSLDAQRDAITLLQKKPAEASKLI 251 K + +A KP A K + Sbjct: 221 LAEKFMRCFLEATKTFIDKPEVAEKYV 247 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 51 KKYGLDVELIEFKSGTDLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVVGGAQLGY--H 108 K G ++ +F SG D++ AI GG + G G S A AS+G D+K A + Sbjct: 51 KATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGTDE 110 Query: 109 ALVAREDSGINKVADLKGKTLASQAEGSTADTVLKGVVLRDAGVKPDDVNVMGVSPQVAV 168 ALV R +GIN VADLKGK LA+ + +L +++ G DV V + V Sbjct: 111 ALVVRNGAGINSVADLKGKKLAAAPVSTDHYQLL--ALIKSQGWTEKDVKVFAIPQPDIV 168 Query: 169 QSLVGKRVDAAFLFEP 184 + +D F+++P Sbjct: 169 AAYNRGDIDGGFVWDP 184 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 111/248 (44%), Gaps = 19/248 (7%) Query: 13 AAALAFSGNA--LALEKFKI----GYLRVMDDAQAMAAYEAGLYKKYGLDVELIEFKSGT 66 A +F+G+A ALEK K+ G + A + G +K GL VE+ +F G Sbjct: 17 AGYFSFNGSAGAQALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGLQVEISDFAGGA 76 Query: 67 DLVKAIVGGQLDSGVFGFSNAVAWASKGADLKVV---GGAQLGYHALVAREDSGINKVAD 123 ++A+VGG D + + + +K + G A A+ + VAD Sbjct: 77 KALQAMVGGSADVVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNKTMPNYKTVAD 136 Query: 124 LKGKTLASQAEGSTADTVLKGVVLRDAGVKPDDVNVMGVSPQV-AVQSLVGKRVDAAFLF 182 LKGK + A GS+ +V+ VL AG+KP DV+ +GV A+ ++ ++DA Sbjct: 137 LKGKKIGVTAPGSST-SVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANL 195 Query: 183 EP------QARIAQLIAPVKQVYEIGEVW--PFPCMVVITSGETLKKKRDAVWKSLDAQR 234 +P Q++ + IA + + + +V+ P P + ++K + +A Sbjct: 196 DPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFIQKYPNTTQALTNAMV 255 Query: 235 DAITLLQK 242 A+ +QK Sbjct: 256 RALKWIQK 263 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 940,305 Number of extensions: 38761 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 5 Length of query: 333 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 247 Effective length of database: 1,212,660 Effective search space: 299527020 Effective search space used: 299527020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)