BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0196.p (183 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 273 5e-75 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 116 1e-27 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 115 3e-27 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 114 7e-27 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 110 7e-26 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 273 bits (699), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 130/142 (91%), Positives = 137/142 (96%) Query: 1 MKLSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKASSGTVS 60 MKLSFNNVAK FGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEK SSG+V+ Sbjct: 1 MKLSFNNVAKHFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVA 60 Query: 61 ADGQAIRGPHPERTLMFQENALYPWLTLQQNVALALEFQNVDKKKSADQARVWLEKVKLK 120 DGQ IRGPHPERTLMFQENALYPWLTLQQNVALALEFQ+VDKKK+A+QARVWLE VKLK Sbjct: 61 GDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWLENVKLK 120 Query: 121 GFENYYPHQVSGGMRQRAALSR 142 GFE+YYPHQVSGGMRQRAAL+R Sbjct: 121 GFEHYYPHQVSGGMRQRAALAR 142 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 80/128 (62%) Query: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKASSGTVSADGQAIRGPHPERTLMF 77 +++ +I G+ V L+GPSGCGKSTLL+ AG SSG + D + + P P+R ++F Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 78 QENALYPWLTLQQNVALALEFQNVDKKKSADQARVWLEKVKLKGFENYYPHQVSGGMRQR 137 QE AL+PW+T++QNVA LE + K + + L+K+ L F +P +SGGMRQR Sbjct: 89 QEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQR 148 Query: 138 AALSRXAA 145 A++R A Sbjct: 149 VAIARVLA 156 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 115 bits (287), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/118 (47%), Positives = 82/118 (69%) Query: 25 IASGELVALVGPSGCGKSTLLHMAAGLEKASSGTVSADGQAIRGPHPERTLMFQENALYP 84 IA GE V++VGP+GCGKSTLL++ AGL + SSG+V G+ ++G + MFQ AL P Sbjct: 34 IAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEELKGINRRAGYMFQAEALMP 93 Query: 85 WLTLQQNVALALEFQNVDKKKSADQARVWLEKVKLKGFENYYPHQVSGGMRQRAALSR 142 W + QNV L+++ ++K +A+ WL +V L+GF + YPHQ+SGGMR+R AL++ Sbjct: 94 WRSALQNVIAGLQYRGHEEKAAAELGEQWLARVGLQGFGDRYPHQLSGGMRKRVALAQ 151 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 114 bits (284), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 57/131 (43%), Positives = 83/131 (63%) Query: 15 LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKASSGTVSADGQAIRGPHPERT 74 +H ++ + +I +G V +G SGCGKSTLL+ AG S G +S DGQ + GP ER Sbjct: 19 VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERG 78 Query: 75 LMFQENALYPWLTLQQNVALALEFQNVDKKKSADQARVWLEKVKLKGFENYYPHQVSGGM 134 ++FQ+++L PW ++Q NVAL L+F V K S ++A+ L V L+ F P+++SGGM Sbjct: 79 VVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGM 138 Query: 135 RQRAALSRXAA 145 RQR L+R A Sbjct: 139 RQRVGLARALA 149 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 110 bits (275), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 80/125 (64%) Query: 18 IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKASSGTVSADGQAIRGPHPERTLMF 77 + +F+ +A GE VA+VGP+GCGKST L + GL K + G V GQ + G P +F Sbjct: 42 LRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTLGEVRVMGQPVNGIDPRIGFVF 101 Query: 78 QENALYPWLTLQQNVALALEFQNVDKKKSADQARVWLEKVKLKGFENYYPHQVSGGMRQR 137 Q +A++PW ++++NVA F+ K ++ A W+ +V L F ++YPHQ+SGGMR+R Sbjct: 102 QNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRRVGLDKFGDHYPHQLSGGMRKR 161 Query: 138 AALSR 142 AL++ Sbjct: 162 VALAQ 166 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 561,723 Number of extensions: 19404 Number of successful extensions: 338 Number of sequences better than 1.0e-08: 76 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 77 Length of query: 183 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 103 Effective length of database: 1,241,070 Effective search space: 127830210 Effective search space used: 127830210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)