BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0193.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb... 477 e-136 gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4... 142 2e-35 gi|300310642|ref|YP_003774734.1| electron transfer component of ... 119 4e-28 gi|300314077|ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protei... 60 3e-10 >gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 477 bits (1227), Expect = e-136, Method: Compositional matrix adjust. Identities = 232/244 (95%), Positives = 236/244 (96%) Query: 1 MSFQVTVQPSGRQFSCDASESILTAAIRAGVGLPYGCKNGACGSCKGKLVSGEVEHGPHQ 60 MSFQVTVQPSGRQF+CDA ESILTAAIRAGVGLPYGCKNGAC SCKGKLVSG+VEHGPHQ Sbjct: 1 MSFQVTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLVSGQVEHGPHQ 60 Query: 61 VRALSEHEQQLGHALFCVAKPHSDVTIEAREVAGVGEIPVRKLPVRVAKLDKVADDVIIL 120 RALS HEQQLG ALFCVAKP SDVTIEAREVAG G+IPVRKLPVRVAKLDKVADDVI+L Sbjct: 61 ERALSAHEQQLGMALFCVAKPQSDVTIEAREVAGAGDIPVRKLPVRVAKLDKVADDVIVL 120 Query: 121 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKDEHMSLHIRHLQGGLFTDQVFT 180 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKDEHMSLHIRHL GGLFTDQVFT Sbjct: 121 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMATAPHKDEHMSLHIRHLPGGLFTDQVFT 180 Query: 181 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWG 240 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWG Sbjct: 181 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWG 240 Query: 241 GRRP 244 GRRP Sbjct: 241 GRRP 244 >gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [Herbaspirillum seropedicae SmR1] Length = 360 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/136 (53%), Positives = 97/136 (71%), Gaps = 4/136 (2%) Query: 109 KLDKVADDVIILSLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMAT-APHKDEHMSLHIR 167 L + A DV IL L+ A L Y+AGQY++ LL DG+RRSYSMAT A + + LH+R Sbjct: 130 SLTRAAPDVAILRLRCAAP--LSYRAGQYIDLLLEDGQRRSYSMATYAKDGSDLLELHVR 187 Query: 168 HLQGGLFTDQVFTTLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLE 227 HL GGLFTD++F ++ +EGP G+FF+RE + +P+ILLASGTGFAP+KA+VE+ Sbjct: 188 HLPGGLFTDRLFNGMQPGQQFSLEGPAGSFFMREGT-QPLILLASGTGFAPVKALVEEAI 246 Query: 228 HAGSKRPVTLYWGGRR 243 +GS R + LYWGGRR Sbjct: 247 ASGSTRAMRLYWGGRR 262 >gi|300310642|ref|YP_003774734.1| electron transfer component of chlorobenzoate 1,2-dioxygenase [Herbaspirillum seropedicae SmR1] Length = 351 Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 6/234 (2%) Query: 12 RQFSCDASESILTAAIRAGVGLPYGCKNGACGSCKGKLVSGEVEHGPHQV-RALSEHEQQ 70 R C A E +L AA R + LP C +G CG+CK + SG + G + ALS E Sbjct: 16 RIIDCGAKEKVLDAAFRNRINLPMDCSDGVCGTCKCRAESGLYDLGDDYIDDALSSDEAG 75 Query: 71 LGHALFCVAKPHSDVTIEAREVAGVGEIPVRKLPVRVAKLDKVADDVIILSLQLPANDRL 130 G L C P SD I + + +VA L + L L+ PAN Sbjct: 76 AGMVLTCQMVPQSDCVIAVPVASTACKTGTASFTGKVAGLSDLGGAAFELVLEAPANAP- 134 Query: 131 QYKAGQYVEF-LLRDGKRRSYSMATAPHKDEHMSLHIRHLQGGLFTDQVFTTLKERDILR 189 + GQYV + G+ RSYS ++P MS I+++ GGL ++ + E L Sbjct: 135 AFLPGQYVNIGVPGSGQHRSYSF-SSPSGASRMSFLIKNVPGGLMSNWL-AGASEGATLE 192 Query: 190 IEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWGGRR 243 + GPLG+F+LR +P+++LA GTG AP +++E+L G +PV L +G R Sbjct: 193 LTGPLGSFYLRP-VKRPVLMLAGGTGLAPFLSMLEELAQQGLDQPVHLIYGVTR 245 >gi|300314077|ref|YP_003778169.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1] Length = 100 Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MSFQVTVQPSGRQFSCDASESILTAAIRAGVGLPYGCKNGACGSCKGKLVSGEVEHGPHQ 60 + F V +QPSG QF S+L +A+ A + LP C+NG C +C KL +G +++ + Sbjct: 5 IRFLVRIQPSGLQFEQVPGRSVLLSALSASIRLPNSCRNGTCRTCMCKLSTGRIDYQ-IE 63 Query: 61 VRALSEHEQQLGHALFCVAKPHSDVTI 87 L+ E+ G L CVA+ SD+ + Sbjct: 64 WPGLTREEKAEGWILPCVAEAASDLEL 90 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 894,586 Number of extensions: 38867 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 4 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)