BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0192.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb...   202   3e-54
gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4...   129   4e-32

>gi|300312623|ref|YP_003776715.1| chaperone activity ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  202 bits (515), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 93/101 (92%), Positives = 99/101 (98%)

Query: 1   MNALCQQWEQDLPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQVYACGAPV 60
           M+ALCQQWEQ LPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQVYACGAP+
Sbjct: 249 MDALCQQWEQTLPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQVYACGAPI 308

Query: 61  VVESAQRDFSAECGLPEDEFYADSFTSEADLAKAVSDTPAA 101
           VVESAQRDFSA+CGLP+DEFYADSFTSEADLAK V+D+PAA
Sbjct: 309 VVESAQRDFSAQCGLPQDEFYADSFTSEADLAKPVADSPAA 349


>gi|300312956|ref|YP_003777048.1|
           CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  129 bits (325), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%)

Query: 1   MNALCQQWEQDLPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQVYACGAPV 60
           ++ALC+ W   LP F YVPV+S A A   WSGRTG VHRAVM+D P +  +QVYACGAPV
Sbjct: 268 LDALCRDWAASLPWFDYVPVLSEADATSGWSGRTGLVHRAVMQDVPAMQQYQVYACGAPV 327

Query: 61  VVESAQRDFSAECGLPEDEFYADSFTSEADLAK 93
           VVESA+RDF+A CGL E  F+AD+F S ADL K
Sbjct: 328 VVESARRDFTAACGLSETAFFADAFVSRADLRK 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 338,192
Number of extensions: 12043
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)