BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0190.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   306   4e-85
gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   132   2e-32

>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  306 bits (785), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 160/183 (87%), Gaps = 4/183 (2%)

Query: 1   MALTHRAAAPSSRSALAAVCAALVLAAC----GTAPTAPPITRLPGAPQSQVPALPATDN 56
           +A    A APS  S LAA C A+  A       T PTAPPI RLPGAPQSQ PALPAT+N
Sbjct: 7   IASMRMAVAPSCLSPLAARCTAVCAALVLAACSTTPTAPPIERLPGAPQSQAPALPATEN 66

Query: 57  GNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARKGRQID 116
           GNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIAR+GRQID
Sbjct: 67  GNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGRQID 126

Query: 117 PSQLRAGDLVFFNTQNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMART 176
           PSQLRAGDLVFFNT NRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMART
Sbjct: 127 PSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMART 186

Query: 177 YFN 179
           YFN
Sbjct: 187 YFN 189


>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  132 bits (332), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 98/163 (60%), Gaps = 4/163 (2%)

Query: 17  AAVCAALVLAACGTAP---TAPPITRLPGAPQSQVPALP-ATDNGNEVALYALSLIDTGY 72
           +A  A L LAA    P   T+P   +L       +  L   T+  +E+A  AL+++   Y
Sbjct: 28  SAHSADLSLAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGINY 87

Query: 73  RFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARKGRQIDPSQLRAGDLVFFNTQN 132
           R+GG +P  GLDCSG+V Y+F +A    +  ++ +I+R G +I    L+ GDLVF+NT  
Sbjct: 88  RYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTLR 147

Query: 133 RPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEMAR 175
           R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF  AR
Sbjct: 148 RGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGAR 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 553,650
Number of extensions: 23995
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)