BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0189.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 457 e-130 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 165 4e-42 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 96 2e-21 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 86 4e-18 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 82 4e-17 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 457 bits (1177), Expect = e-130, Method: Compositional matrix adjust. Identities = 227/257 (88%), Positives = 245/257 (95%), Gaps = 1/257 (0%) Query: 1 MPIEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEV 60 MPIEAIEPQRLYRQISDQLRKLIV+GEFAVGSRLPSER+L++QLGVSRPSLREALIALEV Sbjct: 1 MPIEAIEPQRLYRQISDQLRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEV 60 Query: 61 EGYIEVRMGSGIYVCAPPMQRELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 120 EG+IEVRMGSGIYVC PP+QRE R DLS EEGPLELIRAREMIEGEVAYAAAQHGSKQQI Sbjct: 61 EGHIEVRMGSGIYVC-PPVQRERRIDLSSEEGPLELIRAREMIEGEVAYAAAQHGSKQQI 119 Query: 121 AAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFERLH 180 AAVEEAY+LMI++A+AGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLF+RLH Sbjct: 120 AAVEEAYALMISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLH 179 Query: 181 SHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIREYGNRQQQ 240 SHFDGTRVWQEAI+EH L+M+ALR+RNPEQARAAMRRHMDIAFTRYSANLIREYG+R QQ Sbjct: 180 SHFDGTRVWQEAIDEHALVMEALRQRNPEQARAAMRRHMDIAFTRYSANLIREYGDRVQQ 239 Query: 241 ESAPRKRPARKTSLQLK 257 + PRKR RK+ QLK Sbjct: 240 QERPRKRAVRKSDTQLK 256 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 165 bits (417), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/235 (40%), Positives = 138/235 (58%), Gaps = 15/235 (6%) Query: 7 EPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYIEV 66 + +RLY QI+D+LR ++ F RLP ER L+ QLGVSRPS+REAL+ALE+EG +E+ Sbjct: 18 DSRRLYLQIADRLRTVMYQPGFTSQGRLPPERALAEQLGVSRPSIREALVALELEGRVEI 77 Query: 67 RMGSGIYVC--APPMQ-------RELRHDLSGEEGPLELIRAREMIEGEVAYAAAQHGSK 117 RMGSG+Y+ APP Q +E+ + LS +++ AR + EG + A Sbjct: 78 RMGSGVYLTQAAPPGQQEEPAPDKEMGNSLS------DIMGARAIFEGAIVALVAPLAKP 131 Query: 118 QQIAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFE 177 + I A+ Y M +AG P DR FHIR+A TGN VLV V +L+D R P+ Sbjct: 132 RDIKALRAIYDTMERECQAGQSPAATDRDFHIRIARMTGNDVLVQTVARLYDERQDPISA 191 Query: 178 RLHSHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYSANLIR 232 +L H++ W A+ EH I++A+ R+ QA+AAM+RH+ ++ R + + R Sbjct: 192 KLLDHYEPEDSWLTALHEHREILEAIEARDAIQAQAAMQRHLKMSLKRTMSTMTR 246 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 3 IEAIEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEG 62 + I Q L ++ QL + I G F GS+LP+E L+ Q GVSR +REA+ L+ EG Sbjct: 2 FQKIPAQALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEG 61 Query: 63 YIEVRMGSGIYVCAPPMQRELRHD---LSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQ 119 +E R GSG++V + LR D +S E L+++ R IE EVA AA+ S + Sbjct: 62 VVEPRQGSGVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAED 121 Query: 120 IAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVG---LVTQLFDARLGPLF 176 + A+E A + + AG D + AD FH LA+AT N + ++Q +A Sbjct: 122 LQAIEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTR 181 Query: 177 ERLHSHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTRYS 227 + D +R + EEH I++A+R + AR A + HM A R S Sbjct: 182 GNEARYEDFSR---QVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 85.5 bits (210), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 11/221 (4%) Query: 7 EPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYIEV 66 +PQ L +++ L +I +G G +LP+E E+ GVSR +REA+ L+ G +E Sbjct: 16 KPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVET 75 Query: 67 RMGSGIYVCAPPMQRELRHD---LSGEEGPLELIRAREMIEGEVAYAAAQHGSKQQIAAV 123 R G G +V + D ++ L L+ R +E E A AA +++Q+ + Sbjct: 76 RHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEI 135 Query: 124 EEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPL-FERLHS- 181 EA L A+ + G D + D FH +A ATGN + +++ L +G + +R+++ Sbjct: 136 REALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG---MGVIPRKRINTA 192 Query: 182 ---HFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHM 219 H EH I +A+ + E ARAAMR H+ Sbjct: 193 ELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHL 233 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 18/231 (7%) Query: 6 IEPQRLYRQISDQLRKLIVDGEFAVGSRLPSERELSVQLGVSRPSLREALIALEVEGYIE 65 + P+R ++ + L IV+G VGS+LPSE +L+ VSRP +R+AL L + +E Sbjct: 27 VRPERFAERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVE 86 Query: 66 VRMGSGIYV--------CAPPMQRELR--HDLSGEEGPLELIRAREMIEGEVAYAAAQHG 115 GSG YV P + E R H ++G LEL R +IE E A AA Sbjct: 87 SLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG----LEL---RLVIEPECAAMAALRR 139 Query: 116 SKQQIAAVEEAYSLMIAHAEAGIDPLEADRLFHIRLAEATGNSVLVGLVTQL-FDARLGP 174 ++Q + +E A G D FH +A ATGN V ++ L +D Sbjct: 140 NRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAV 199 Query: 175 LFERLHSHFDGTRVWQEAIEEHGLIMQALRERNPEQARAAMRRHMDIAFTR 225 R H + Q+A++EH I + +R ++ E AR AMR H++ A TR Sbjct: 200 NMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTR 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 810,726 Number of extensions: 34112 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 12 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)