BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0184.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333...   549   e-158
gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport pr...    61   1e-10

>gi|300312630|ref|YP_003776722.1| hypothetical protein Hsero_3333
           [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  549 bits (1415), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/288 (94%), Positives = 279/288 (96%)

Query: 1   VPWGAGGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATV 60
           VPWGAGGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATV
Sbjct: 52  VPWGAGGGTDATARIIGALLEKDLGQPVNVVNRTGGNGAVGHQAIASAAPDGYTIGIATV 111

Query: 61  EISMMHHQGLTKLTPRDLTPLALMNFDPAALTVSTESPYKNFDDLLKAIKANPGKLKASG 120
           EISMMHHQGLTKLTPRD TPLALMNFDPAALTVS +SPYK+FDDLLKAIKANPGKLKASG
Sbjct: 112 EISMMHHQGLTKLTPRDFTPLALMNFDPAALTVSHDSPYKSFDDLLKAIKANPGKLKASG 171

Query: 121 TGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLID 180
           TGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLID
Sbjct: 172 TGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPEARSLID 231

Query: 181 AGKATPLVIMANEPAALYPKVPTLKSLTGSTWTNGAWRGIVGPKGLPADVQGKLSASLKK 240
           AGKA PLV+MANEPAALYPKVPTLKSLTGS WTNGAWRGIV PKGLPA+VQ +LSASLKK
Sbjct: 232 AGKAVPLVVMANEPAALYPKVPTLKSLTGSGWTNGAWRGIVAPKGLPAEVQTRLSASLKK 291

Query: 241 IYDSKEYKDFMSGRGFGTQYADAAEFGKFMDKSDEDMGAILKTLGMAR 288
           IY+SK+YKDFMSGRGFG  YAD+AEFGKFMDKSD DMGAILKTLGMAR
Sbjct: 292 IYESKDYKDFMSGRGFGVMYADSAEFGKFMDKSDADMGAILKTLGMAR 339


>gi|300313817|ref|YP_003777909.1| tricarboxylic acid transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 8/199 (4%)

Query: 1   VPWGAGGGTDATARIIGALLEKDLGQP--VNVVNRTGGNGAVGHQAIASAAPDGYTIGIA 58
           VP   GGG DA+ +++  +++++ G+P  + +    GG GAV   ++ S    G    +A
Sbjct: 29  VPAKPGGGMDASCKLLQRVMQEE-GEPRSLKLSYLPGGIGAVAWSSVVSQRRGGPDTLVA 87

Query: 59  TVEISMM-HHQG-LTKLTPRDLTPLALMNFDPAALTVSTESPYKNFDDLLKAIKANPGKL 116
               S++   QG   K  P D+  +A +  D   + V +++P++N   LL+AI+ +P  +
Sbjct: 88  FSGGSLLGLAQGKYGKAVPDDVRWVAGIGIDHGMIAVRSDAPWRNLKQLLQAIRRDPSAV 147

Query: 117 KA--SGTGQGGIWHLGLAGMLNDLKVAPNAVRFVPSNGAAPAMVDLAAGGVDIVAASLPE 174
               SGT     W L +A +     + P   RFV   G   +   L AG V +++    E
Sbjct: 148 TIGLSGTVGSQDW-LKMALLGQRAGIVPRQFRFVALEGGGDSFAALQAGHVQVISGDASE 206

Query: 175 ARSLIDAGKATPLVIMANE 193
           A   +  GK   L +++ +
Sbjct: 207 AAYFMAEGKVRVLAVLSEQ 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,068,195
Number of extensions: 51137
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)