BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0177.p (363 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 717 0.0 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 360 e-101 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 356 2e-99 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 338 4e-94 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 332 2e-92 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/363 (97%), Positives = 358/363 (98%), Gaps = 2/363 (0%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI Sbjct: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDK+FV+ERVKKAADI Sbjct: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH Sbjct: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMN 240 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYD+PANLFVAGFIGSPAMN Sbjct: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMN 240 Query: 241 FIPATLRRNGGGGAAEVEFADGTRVPAPYGSALQGNDGQKVTYGVRPEHLSIGAAGQGIA 300 FIPATLRRN G AEVEFADGTRVPAPYG+ALQGNDGQKVTYGVRPEHLSIGAAGQGIA Sbjct: 241 FIPATLRRNATG--AEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQGIA 298 Query: 301 TKVIVVEPTGADTEVFSRFGETSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESGKSL 360 TKVIVVEPTGADTEVFSRFG+TSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESGKSL Sbjct: 299 TKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAESGKSL 358 Query: 361 AAR 363 A R Sbjct: 359 AGR 361 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 360 bits (925), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/382 (52%), Positives = 254/382 (66%), Gaps = 41/382 (10%) Query: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 MA++ ++ V+K +G+ +I G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKK 116 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + KS ++ RV++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGS 236 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P ++Y PA FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 237 PAMNFIPATLRRNGGGGAAEVEFADGT-----RVPAPYGSALQGNDGQKVTYGVRPEHLS 291 P MN + L +G A E + G R+P P L G GQ+ GVRPEHL Sbjct: 241 PPMNLLQGKLSADG----ASFEVSKGNASDILRLPQP----LTGAAGQERILGVRPEHLL 292 Query: 292 I---GAAGQGIATKVIVVEPTGADTEVFSRFGETSLT----------SIFRERHDFGAGD 338 G+A Q ++ +V +VE GA+ V +R G +L + R FGAGD Sbjct: 293 PILDGSAAQ-LSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGD 351 Query: 339 VIHLVPDHSRTHLFDAESGKSL 360 V H FD +S + + Sbjct: 352 V----------HWFDVKSTRRI 363 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 356 bits (913), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 192/369 (52%), Positives = 250/369 (67%), Gaps = 19/369 (5%) Query: 1 MASVQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEI 60 MA+V IR + K++ +++R ++++I DGEF V VGPSGCGKSTLLRM+AGLEEI+ G++ Sbjct: 1 MAAVSIRNLAKRYDDNEVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 Query: 61 LIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAADI 120 IG +N V R +AMVFQ+YALYPHM++ DNMAF L +A K K+ ++ V+ AA I Sbjct: 61 DIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 Query: 121 LGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELH 180 L ++ LLDR PR LSGGQRQRVA+GRAI R P VFLFDEPLSNLDA LRV+MR E +LH Sbjct: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 Query: 181 QRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAMN 240 LKTT IYVTHDQIEAMT+AD+IVV+ +G +EQ G P LY HPAN FVAGFIGSP MN Sbjct: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 Query: 241 FIPATLRRNGGGGAAEVEFADGTRVPAPYG----SALQGND---GQKVTYGVRPEHLSIG 293 FI T+ A ++ ADG +V P G +A+ G+ GQKVT GVRPEHL+I Sbjct: 241 FIDGTV--------AAIQ-ADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIA 291 Query: 294 AAGQGIATKVIVVEPTGADTEVFSRFGETSLTSIFR--ERHDFGAGDVIHLVPDHSRTHL 351 + + +E G + +++ + + I R + D G V+ L D +R HL Sbjct: 292 QGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHL 351 Query: 352 FDAESGKSL 360 F A+ G++L Sbjct: 352 FGAD-GQAL 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 338 bits (867), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 190/369 (51%), Positives = 241/369 (65%), Gaps = 12/369 (3%) Query: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MA V I+ ++K + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLEEI+GGE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAAD 119 + IGG VVN++ P +R IAMVFQ+YALYPHM V NMAF L +A KS ++ R++ AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 IL ++ LL R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 180 HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDHPANLFVAGFIGSPAM 239 H++L T +YVTHDQ+EAMT+ D+IVVM +G ++Q G PL+LY P NLFVAGFIGSP M Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 240 NFIPATLRRNGGGGAAEVEFADGTRVPA---PYGSALQGNDGQKVTYGVRPEHLSIGAA- 295 NF + R G +VE A G R+ A P G G VT G+R E + G Sbjct: 241 NFFQGVVTRCDDSG-VQVEIAGGLRLLADVDPLGV----TPGAAVTLGLRAEQIREGLGD 295 Query: 296 GQGIATKVIVVEPTGADTEVFSRF-GETSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDA 354 GQ + V +VE G ++ G + + G I L HLFDA Sbjct: 296 GQPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDA 355 Query: 355 ESGKSLAAR 363 + G++L R Sbjct: 356 Q-GQALRRR 363 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 332 bits (852), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 180/326 (55%), Positives = 233/326 (71%), Gaps = 14/326 (4%) Query: 1 MASVQIRAVKKQFG-STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 MAS+ +RA +K +G + +IR VD+DI + EF V +GPSGCGKSTLLR +AGLE++T G+ Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKSFVEERVKKAAD 119 + IGG VN+V R +AMVFQ+YAL+PHMTV +NM+F LTLAK K+ +E++V++AA Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 IL L +LL R P++LSGGQRQRVA+GRAIVR P VFLFDEPLSNLDA LR Q R EI L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 180 HQRLKTTS-IYVTHDQIEAMTMADQIVVM-------RDGLVEQRGRPLDLYDHPANLFVA 231 H++ + S +YVTHDQ+EAMT+AD+IV++ R G + Q G P++LY HP N FVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 232 GFIGSPAMNFIPATLR-RNGGGGAAEVEFADGTRVPAPYGSALQGNDGQKVTYGVRPEHL 290 GFIGSP MNF+PA + G + ++ T + A G ALQ GQ VT GVRPEH+ Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQG-ALQ--PGQMVTVGVRPEHM 297 Query: 291 SIGAAGQ-GIATKVIVVEPTGADTEV 315 IG+ GQ GI +V++VE G T V Sbjct: 298 EIGSQGQYGIHREVVLVERLGEQTYV 323 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,101,595 Number of extensions: 47845 Number of successful extensions: 547 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 141 Length of query: 363 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 277 Effective length of database: 1,212,660 Effective search space: 335906820 Effective search space used: 335906820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)