BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0175.p (299 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease ... 588 e-169 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 103 2e-23 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 96 3e-21 gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 96 3e-21 gi|300311926|ref|YP_003776018.1| glycerol-3-phosphate ABC transp... 82 4e-17 >gi|300312636|ref|YP_003776728.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 588 bits (1517), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/299 (99%), Positives = 298/299 (99%) Query: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYL 60 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDN+TYL Sbjct: 1 MLSRFLNNRNVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNFTYL 60 Query: 61 AGDSLAQLSLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 AGDSLAQLSLFNTVFYTVSASILKF LGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS Sbjct: 61 AGDSLAQLSLFNTVFYTVSASILKFMLGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALS 120 Query: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA Sbjct: 121 ALAFWWLYDAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLA 180 Query: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG Sbjct: 181 GLQTISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRG 240 Query: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK Sbjct: 241 GPLNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 129/269 (47%), Gaps = 7/269 (2%) Query: 16 FMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGSFIGLDNYTYLAGDSLAQLSLFNTVF 75 F+APA ++ +V++ YP+ I+L F E F+GL NY L +L N V Sbjct: 41 FLAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVELFHAPTFYTALKNNVL 100 Query: 76 YTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQFSVI 135 + + +L +GL +A+ LN+ V +++ P+++ + L + W YD F ++ Sbjct: 101 WLL-MFLLAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVVGLMYSWFYDPSFGLL 159 Query: 136 SWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLYEAAAI 195 S L + + LGD A + +FA +W + I L GL ++ EAA + Sbjct: 160 SL------LFGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAARM 213 Query: 196 DGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHLMATLSFQ 255 +GA W R+V LP L + S++ F LI V+T GGP ++ ++A ++ Sbjct: 214 EGAKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAYD 273 Query: 256 RAIPGGALGEGAALATYMIPFLLAAIMFS 284 +AI G AA+A + +L I++ Sbjct: 274 QAIKYYRQGYSAAVAVTLFAIMLVYIVYQ 302 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 7/278 (2%) Query: 12 LGMLFMAPAVILLVVFLTYPLGLGIWLG-FTDTKIGGEGSFIGLDNYTYLAGDSLAQLSL 70 L L +AP +I+ ++F +P ++ GG F+ DN+ L GD S Sbjct: 12 LPYLLVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKTLFGDPTYLESF 71 Query: 71 FNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDA 130 T ++ + AL L LA+ ++ + ++ ++ P+ V + + + +L Sbjct: 72 RTTAIFSALVAFFGLALSLLLAVFADRVRRGASIYKTFLIWPYAVSPVVVGVLWMFLLSP 131 Query: 131 QFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPSLY 190 ++S L +GL D++ + +A V A +W+ I + + LAGLQ+I SL Sbjct: 132 SLGILSHVLSWLGLP---WDYMINGTHAMILIVIAAIWKQISYNFLFFLAGLQSIPKSLI 188 Query: 191 EAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTD-FQLIYVLTRGGPLNATHLM 249 EAAAIDGA P ++F + PL++P + +V++ F D F ++ T GGP T ++ Sbjct: 189 EAAAIDGAGPVKRFFTIVFPLISPTTFFLFVVNVVYAFFDTFVIVDATTHGGPGKDTEIL 248 Query: 250 ATLSFQRAIPGGALGEGAALATYMIPF--LLAAIMFSY 285 F GG LG AA + ++ LL + F Y Sbjct: 249 VYKVFSDGFKGGDLGGSAAQSVVLMALVILLTVVQFKY 286 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 125/241 (51%), Gaps = 3/241 (1%) Query: 10 NVLGMLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGS-FIGLDNYTYLAGDSLAQL 68 +VL L ++PA++LL+ F YP +W F T G S F+GL+NY +A D + Sbjct: 7 SVLPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMADDPVFWQ 66 Query: 69 SLFNTVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLY 128 +L N +++ + L AL + +A+ +N+ + + R P ++P A + + Y Sbjct: 67 ALCNNLWFALGTIPLAIALAILMALWVNEKLAGRGVLRLAYFTPTVLPMIAVANIWLFFY 126 Query: 129 DAQFSVISWALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQTISPS 188 Q+ ++ +GL ++LG+P + + VW+ F I LA LQ ISP Sbjct: 127 TPQYGLLEQITGALGLPSH--NWLGNPQTVLGALMVVAVWKEAGFFMIFYLAALQQISPV 184 Query: 189 LYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTDFQLIYVLTRGGPLNATHL 248 L EAAA++GA+ WQ F V PLL P V+ +++ F I V+T+GGP NA+ L Sbjct: 185 LAEAAALEGASRWQYFWRVQFPLLMPTTLFVLINALINAFRLVDHIVVMTKGGPDNASSL 244 Query: 249 M 249 + Sbjct: 245 L 245 >gi|300311926|ref|YP_003776018.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 28/297 (9%) Query: 14 MLFMAPAVILLVVFLTYPLGLGIWLGFTDTKIGGEGS-FIGLDNYTYLAGDSLAQLSLFN 72 +L P ++++ +F +P I F + G GS F+GLDNY + D SL Sbjct: 14 LLLATPQMLIVFLFFLWPAVKAIAWSFYLVRPFGNGSRFVGLDNYLRILTDDSFYASLRA 73 Query: 73 TVFYTVSASILKFALGLWLAILLNKNVPLKTFFRAIVLLPWIVPTALSALAFWWLYDAQF 132 T+ +T +++L + L LA L +V K R+I + P+ V + + L + Sbjct: 74 TLVFTAGSTLLAVTIALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGIVLKVLINPVT 133 Query: 133 SVIS---------WALHKMGLIDRYIDFLGDPWNARWSTVFANVWRGIPFVAISLLAGLQ 183 +++ WA H +G A + + A W +P I A LQ Sbjct: 134 GLLAFLNQLWPGVWAPHLIGA------------QAMLALIAAFAWTQVPLNFILFSAALQ 181 Query: 184 TISPSLYEAAAIDGATPWQQFRHVTLPLLTPIIAVVMTFSVLFTFTD-FQLIYVLTRGGP 242 I L AAAIDGA PW++F + LP++ P + + +V+ FT F L+ LT+GGP Sbjct: 182 RIPADLMGAAAIDGAGPWRRFIDIQLPMIAPALLLAGVINVIEAFTHGFGLVDALTQGGP 241 Query: 243 LNATHLMATLSFQRAIPGGALGEGAALATYMIPFLLAAIMFSYFGLQRRGWQQGGDK 299 +T ++A + G L +AL+ ++ F++A + LQ R ++QG + Sbjct: 242 GRSTAILAYQIYSDGFIGLDLSGSSALSVVLMLFIVALTL-----LQLRFFRQGAGR 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.143 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 962,431 Number of extensions: 40184 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 12 Length of query: 299 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 214 Effective length of database: 1,217,395 Effective search space: 260522530 Effective search space used: 260522530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)