BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0170.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   486   e-139
gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   216   1e-57
gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   184   4e-48

>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  486 bits (1251), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/240 (96%), Positives = 238/240 (99%)

Query: 1   MSQDKEPRRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEW 60
           MSQDKEPRRRFLRQVLAIVPAA+TLGGATTVAVSQ AMADSSEPGKPRAYTPTYFTA EW
Sbjct: 1   MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60

Query: 61  AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120
           AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ
Sbjct: 61  AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120

Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMEGGKIAFDTVPAKTFFS 180
           LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMM+GGKI+F+TVPAKTFF+
Sbjct: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180

Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVSILGEKG 240
           FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARAD+ADWVDQYNVKYPYGPVSILGEKG
Sbjct: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240


>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  216 bits (550), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 140/230 (60%), Gaps = 9/230 (3%)

Query: 8   RRRFLRQVLAIVPAATTLGGATTVAVSQPAMADSSEPGKPRAYTPTYFTAPEWAFLNAAV 67
           RRRFLR  L   P A         A S  A A+   P +P  Y P++F   E+A L+A  
Sbjct: 10  RRRFLRGALTAAPVAAL----AVTAGSLTAKAEGPSPDQP--YQPSFFNRDEFALLSALA 63

Query: 68  DHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRD 127
           D LIP+D  G GAL+ GVPEFID QM TPYG G+LWYMQGPF PD+ PE GYQL   PR+
Sbjct: 64  DTLIPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRE 123

Query: 128 IYRQGIAACNDWCSKNHGKVFAELD---KAKQLEVLKMMEGGKIAFDTVPAKTFFSFMLG 184
           +Y++G+A  +    + +G  + EL+   + K +   +  E G +   T+P    F+ +L 
Sbjct: 124 LYKKGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEKGEQGSLKMATIPPSALFNLLLQ 183

Query: 185 NTKEGYFADPMYGGNQKMGGWKMVGFPGARADYADWVDQYNVKYPYGPVS 234
           N  EGYF DP  GGN+ MG WKM+GFPGARADY DWVDQY   YP  P+S
Sbjct: 184 NVHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233


>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  184 bits (468), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 129/215 (60%), Gaps = 7/215 (3%)

Query: 30  TVAVSQPAMADSSEPGKPRAYTPTYFTAPEWAFLNAAVDHLIPSDQYGAGALETGVPEFI 89
           ++ + + A AD  E  + + Y P +F   +W F+ AA D LIP++  G GALET VP FI
Sbjct: 24  SIPLLKEAQADGLEGIELQHYKPVFFNPAQWLFILAACDRLIPAEGRGPGALETNVPVFI 83

Query: 90  DRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPRDIYRQGIAACNDWCSKNHGKVFA 149
           D+Q+    G G   Y QGP  PD+   LG+Q+   P+D+YR GI        + HGK F 
Sbjct: 84  DQQLHA--GLGSDIYQQGPHQPDAPATLGFQIPYAPQDVYRIGITLTQQISQQQHGKPFE 141

Query: 150 ELDKAKQLEVLKMMEGGKIAFDTVPAKT-----FFSFMLGNTKEGYFADPMYGGNQKMGG 204
           +LD   +  +L  ++   + F  +  K+     FF  +LG+TK GY ADPMYGGN+ M  
Sbjct: 142 QLDAKDKDALLTALQKNGVDFAALGEKSMRPSQFFGQLLGDTKNGYLADPMYGGNKDMKA 201

Query: 205 WKMVGFPGARADYADWVDQYNVKYPYGPVSILGEK 239
           W  +GFPGARA Y +WVDQ+NVKYP GPVS+ G++
Sbjct: 202 WVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKR 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,091
Number of extensions: 37677
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)