BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0167.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312642|ref|YP_003776734.1| transmembrane protein [Herbaspi...   515   e-147

>gi|300312642|ref|YP_003776734.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 363

 Score =  515 bits (1327), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/373 (72%), Positives = 311/373 (83%), Gaps = 10/373 (2%)

Query: 1   MNDHSDLPESSLPSPSVPAAPGNFATALRDSADHSAPQAFTFSGRGSEYFRIWIVNLLLS 60
           MN+ SDLP  + P          F+T L ++A    P+AF+FSGRG EYFRIWIVNLLLS
Sbjct: 1   MNEPSDLPSQATPP---------FSTVL-NTAAPVKPEAFSFSGRGGEYFRIWIVNLLLS 50

Query: 61  IVTLGIYSAWAKVRRLRYFYDNTSVAGASFDYHGNPVAILKGRILAVVLIVVYQIAGYIN 120
           IVTLGIYSAWAKVRRLRYFYDNTSVAG SFDYHGNP+AILKGRI+AVVL+ VY  AG  +
Sbjct: 51  IVTLGIYSAWAKVRRLRYFYDNTSVAGGSFDYHGNPIAILKGRIIAVVLLAVYNFAGAAS 110

Query: 121 LLLGLIAALALMLASPWLIWRSLQFKLYNTSYRGIRFGFRGSFGGAFKNFLLWPMMSGFS 180
            LLGL AAL L+LA PWL+WRSLQFKLYNTSYRGIRFGFRGS GGA +NFL+WPM++  S
Sbjct: 111 PLLGLAAALLLVLAGPWLLWRSLQFKLYNTSYRGIRFGFRGSLGGAARNFLMWPMLASIS 170

Query: 181 LGLLMPMAAQRFKRFQHNEARFGATHFSFHGSVGAFYLAFAAGIGGWIAGSVLIVVGFGG 240
           LGLL P+A QRFKR+QH+EARFGATHFSFHGSVGAFY  F  G+G W+ G ++I VGFGG
Sbjct: 171 LGLLAPLAYQRFKRYQHSEARFGATHFSFHGSVGAFYKTFLIGLGLWLGGIIVIFVGFGG 230

Query: 241 VALFQSVQSGAGSIAAFGLMLFALYAWSFLIIPLWITLLQNLVWNNTRLGEHRFESRMRW 300
           + L Q V +G  ++ +  LM+ ALYAW+FL +PLW+TLLQNLVWNNTRLGEHRF+S MRW
Sbjct: 231 ITLIQMVHAGTTAVFSLMLMVLALYAWTFLALPLWMTLLQNLVWNNTRLGEHRFQSDMRW 290

Query: 301 GRTAIILLTNVLGIAFTLGLFTPFAQIRMMRYRIESVTLLPAGSLDDFIASSESPGSATG 360
           GRTA I+ TNVLG+ FTLGL+TPFAQIRMMRYRIES+TLLPA SLDDF+ASSE+ GSATG
Sbjct: 291 GRTAFIVFTNVLGVVFTLGLYTPFAQIRMMRYRIESLTLLPASSLDDFVASSEAHGSATG 350

Query: 361 EGLGDLLDFDLSM 373
           EGLGDLLDFDLSM
Sbjct: 351 EGLGDLLDFDLSM 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 960,610
Number of extensions: 35312
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)