BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0166.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312643|ref|YP_003776735.1| Zn-dependent protease with chap...   559   e-160
gi|300309997|ref|YP_003774089.1| Zn-dependent protease [Herbaspi...    74   2e-14
gi|300312597|ref|YP_003776689.1| Zn-dependent protease with chap...    65   9e-12

>gi|300312643|ref|YP_003776735.1| Zn-dependent protease with
           chaperone function transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 329

 Score =  559 bits (1441), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/331 (87%), Positives = 309/331 (93%), Gaps = 2/331 (0%)

Query: 1   MTVSASYYDGKTSKRYQVTLDVSDGMAQVRGEVERDCPIAQLRVSERLNRAARKVSFPDG 60
           M+V ASYYDG+TS+R+QVTL+V  G+AQVRGE+ERDCPI QLRVSER  RAARKVSFPDG
Sbjct: 1   MSVLASYYDGRTSRRHQVTLEVVAGVAQVRGEIERDCPIGQLRVSERFARAARKVSFPDG 60

Query: 61  AYLEIIDGAAFSALLHETGHRDSLVVRLQQSWRHALAACAALVAVVVLSYLYLLPLAAQG 120
           AYLEIIDGAAF  LL ETGH+DSLVVRLQQSWRHALAACA LVAVVVLSY+YLLPLAAQG
Sbjct: 61  AYLEIIDGAAFRELLQETGHQDSLVVRLQQSWRHALAACAVLVAVVVLSYVYLLPLAAQG 120

Query: 121 ITAILPVAVDRQVGQGTLDFLDQHVLAPSQLDAQRAKGITSRFRALTAPMADAPDYQIVF 180
           I A LPVAVDRQ+GQGTL+FLDQHVLAPSQLDA+R + IT+RFRALTAP+ DAPDYQIVF
Sbjct: 121 IAATLPVAVDRQIGQGTLEFLDQHVLAPSQLDARRTQAITARFRALTAPLPDAPDYQIVF 180

Query: 181 RKSRIGPNAFALPSGQIVVTDEIVQLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIA 240
           RKSRIGPNAFALPSGQIVVTDEIV+LLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIA
Sbjct: 181 RKSRIGPNAFALPSGQIVVTDEIVRLLDDDDALMGVLAHELGHVHRRHLMRRLIQSSAIA 240

Query: 241 ATATLLFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE 300
           ATAT+LFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE
Sbjct: 241 ATATVLFGDVSAVLANIPTVLLDLKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLE 300

Query: 301 DMGKSKDSPAARYLSSHPANEERIAHILGTR 331
             G  KD PA+ YLSSHPAN+ERIAHILG R
Sbjct: 301 SAG--KDDPASPYLSSHPANDERIAHILGAR 329


>gi|300309997|ref|YP_003774089.1| Zn-dependent protease
           [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 188 NAFALPSGQIVVTDEIVQLLDDDDALMGVLAHELGHVHRRHLMRRLIQ--SSAIAATATL 245
           NAFALP G I V   +V     +  L GV++HE+GHV +RH+ R L Q   +++   A +
Sbjct: 158 NAFALPGGFIGVNSGLVLAAQSESELAGVMSHEIGHVAQRHIARMLGQQKQNSMIQLAAI 217

Query: 246 LFGDVSAVL-----ANIPTVL--------LDLKYSRDIEREADDYAIAMFKANGLPRQKL 292
           + G ++ V      A + T++          L +SRD EREAD   + + +  G     +
Sbjct: 218 VLGALAGVSKAGGDAAMATMMGGTGLAVQRQLNFSRDAEREADRIGLQIMRDGGFDPSGM 277

Query: 293 ALVFEKLEDMGKSKDSPAARYLSSHPANEERIAHI 327
              F +L+   ++       YL +HP   ERIA I
Sbjct: 278 VTFFGRLQAASRNYSDAVPPYLMTHPLTTERIADI 312


>gi|300312597|ref|YP_003776689.1| Zn-dependent protease with
           chaperone function protein [Herbaspirillum seropedicae
           SmR1]
          Length = 273

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 14/184 (7%)

Query: 154 QRAKGITSRFRALTA---PMADAPDYQIVFRKSRIGPNAFALPSGQIVVTDEIVQLLD-D 209
           QR + I SR    T    P A   ++++    S    NA+ +P G+I V   +++ L   
Sbjct: 77  QRVRNIASRLIPQTGVFRPDALKWNWEVNVLSSD-ETNAWCMPGGKIAVYTGLIEKLKIS 135

Query: 210 DDALMGVLAHELGHVHRRHLMRR----LIQSSAIAATATLL-FGDVSAVLAN-IPTVLLD 263
           DD L  V+ HE+ H  R H   R    ++ +SAI+  A LL  GDV       +   L+ 
Sbjct: 136 DDELAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGDVGKQGGQYLYMGLMG 195

Query: 264 LKYSRDIEREADDYAIAMFKANGLPRQKLALVFEKLEDMGKSKDSPAARYLSSHPANEER 323
           L  SR  E EAD   + +    G   +    +++K+  +G  +     +++S+HP++ ER
Sbjct: 196 LPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGEE---PMKFMSTHPSSSER 252

Query: 324 IAHI 327
           IA +
Sbjct: 253 IADL 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 954,390
Number of extensions: 37249
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)