BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0163.p (287 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312645|ref|YP_003776737.1| LysR family transcription regul... 513 e-147 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 139 3e-34 gi|300313964|ref|YP_003778056.1| LysR family transcription regul... 132 4e-32 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 132 4e-32 gi|300312894|ref|YP_003776986.1| LysR family transcription regul... 130 1e-31 >gi|300312645|ref|YP_003776737.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 513 bits (1320), Expect = e-147, Method: Compositional matrix adjust. Identities = 266/287 (92%), Positives = 274/287 (95%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGV LFRRLPRGLALT Sbjct: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVALFRRLPRGLALT 60 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLR+FQQQHPFV Sbjct: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLRQFQQQHPFV 120 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPEIAARLRTPSDL 180 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGT+AERLFEAPLAPMCAP IAARLR+P+DL Sbjct: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTQAERLFEAPLAPMCAPAIAARLRSPADL 180 Query: 181 AAETLLRSYRSDEWHRWFAAAAAPCPPLRGFVFDSSLALAEAAAQEAGVALLPVMMFERE 240 AETLLRSYRSDEW RWFAAA A CPPLRGFVFDSSLALAEAAAQEAGVALLPV+MFERE Sbjct: 181 GAETLLRSYRSDEWGRWFAAAGAACPPLRGFVFDSSLALAEAAAQEAGVALLPVLMFERE 240 Query: 241 LRQGRLVCPFEQRIVLGAYWLTRLKSRPQTAAMAAFRTWLKVQADCV 287 L+QGRLVCPF QRIVLGAYWLT LKSRPQTAAMAAFR WL+ A + Sbjct: 241 LQQGRLVCPFGQRIVLGAYWLTSLKSRPQTAAMAAFRQWLQSHAGAM 287 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 139 bits (350), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 142/267 (53%), Gaps = 6/267 (2%) Query: 1 MYLPLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALT 60 + LPLNA+RAF +ARH SFT AA EL+VT A+S Q+KNLE LG+ LF R R + LT Sbjct: 4 LTLPLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLT 63 Query: 61 DEGLALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFV 120 + G + + +A+ + + + V +FAV WL+P L +F +++P + Sbjct: 64 ERGRQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGI 123 Query: 121 DLRLLTNNNRVDLAGEGLDYAIRFGDGAWHGT-EAERLFEAPLAPMCAPEI--AARLRTP 177 +++T+ V AG D A+R G+ W T + +R E L + +P + A L Sbjct: 124 APQVVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPLEDV 183 Query: 178 SDLAAETLLRS-YRSDEWHRWFAAAAAPCPPLRGFV-FDSSLALAEAAAQEAGVALLPVM 235 S LA T+L S R ++W W A + + FD + +A GVAL PV Sbjct: 184 SGLARHTVLLSRSRRNDWEDWRKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVS 243 Query: 236 MFERELRQGRLVCPF-EQRIVLGAYWL 261 + + +LR GRLVCPF + R+ L Y+L Sbjct: 244 LADNDLRSGRLVCPFPDLRLTLAPYYL 270 >gi|300313964|ref|YP_003778056.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 132 bits (331), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 148/305 (48%), Gaps = 21/305 (6%) Query: 4 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDEG 63 PL ALRAFE +AR LSFT AA+EL VTQ+AVS QV+ LE L LF RL R + LT G Sbjct: 6 PLTALRAFEATARLLSFTAAADELHVTQSAVSRQVRILEAHLEQKLFVRLTRRIELTRAG 65 Query: 64 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVDLR 123 A + Q+F RI Q R+R LT+GV+ A WL+PRL F +++ +D+R Sbjct: 66 AAYFQQIRQAFERICAAGEQLHARRQRHTLTIGVLPGLASLWLVPRLELFWRENKEIDVR 125 Query: 124 LLTNNNRVDLAGEGLDYAIRFGD----------------GAWHGTEAERLFEAPLAPMCA 167 ++ D +D +I+ G+ WH A+ LF L +C Sbjct: 126 IVVATGAADFGRTTMDMSIQVGNLPGTTSQGLPLKKRMAVDWHDLRADLLFPDALVALCH 185 Query: 168 PEIAAR--LRTPSDLAAETLLRS-YRSDEWHRWFAAAAAPCPPLRGFVFDSSLALA-EAA 223 P + + +R+ +DL+ L+ + R D W W + + + S +A +AA Sbjct: 186 PRLWRQHPVRSVADLSQHRLIHTAIRPDAWAHWLQQHGSRLGARQAGMECSQYPVALQAA 245 Query: 224 AQEAGVALLPVMMFERELRQGRLVCPFEQRI-VLGAYWLTRLKSRPQTAAMAAFRTWLKV 282 G+AL+P ++ E Q RL F G Y+L R +A+ FR WL + Sbjct: 246 MNGEGIALVPSVLAESFDPQHRLRRLFGGPTPSAGQYYLLTPGDRYDDSAVRRFRQWLLM 305 Query: 283 QADCV 287 QA + Sbjct: 306 QAQAM 310 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 132 bits (331), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 142/292 (48%), Gaps = 12/292 (4%) Query: 4 PLNALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDEG 63 PL +L AFE + RH SFTRAA EL +TQ+A+S Q+ LE+ LG LF R PR L LT G Sbjct: 8 PLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTVSG 67 Query: 64 LALLPVVAQSFGRIADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVDLR 123 +V + A+ + + LTV AV WL PRL F+ +HP LR Sbjct: 68 QRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARHPDCHLR 127 Query: 124 LLTNNNRVDLAGEGLDYAIRF-GDGAWHGTEAERLFEAPLAPMCAP-EIAARLRTPSDLA 181 L+ N++ L+ D I F DG G A RL++ + P+C+P + RL P DL Sbjct: 128 LVVNDSLAQLSETDFDMGIYFLRDGPPAGLAARRLYDEEVFPVCSPGYLDGRLLAPEDLR 187 Query: 182 AETLL------RSYRSDEWHRWFAAAAAPCPPLRGFVFDSSL-ALAEAAAQEAGVALLPV 234 +TLL R + S W W A P + + + L + A + GV L Sbjct: 188 HQTLLTLEDGQRQWMS--WQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQGVVLAWR 245 Query: 235 MMFERELRQGRLVCPFEQRIVL-GAYWLTRLKSRPQTAAMAAFRTWLKVQAD 285 M + + QG LV + L G Y+ + R + AA AFR+WL +++ Sbjct: 246 HMIDACMEQGLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAESE 297 >gi|300312894|ref|YP_003776986.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 6 NALRAFEVSARHLSFTRAAEELSVTQTAVSMQVKNLEQRLGVTLFRRLPRGLALTDEGLA 65 ++L AFE +ARH SF RAAEEL++T+ A+S Q+ LE LGVTLF R+ + L G Sbjct: 9 SSLMAFEAAARHGSFARAAEELALTEGAISRQISRLEGFLGVTLFERIGNRVRLLPHGQR 68 Query: 66 LLPVVAQSFGRI----ADVLAQFEDGRRREVLTVGVVGTFAVGWLMPRLREFQQQHPFVD 121 V ++ R+ +++Q +G L + V TFA+ WL+PRL F HP + Sbjct: 69 YASHVRETLERLDRDSQHLMSQPPNG---ASLDIAVSPTFAMRWLIPRLPRFAALHPHIT 125 Query: 122 LRLLTNNNRVDLAGEGLDYAIRFGDGAWHGTEAERLFEAPLAPMCAPE-IAARLRTPSDL 180 + L L G GLD AI F AW G + L + L P+C P +A P+ Sbjct: 126 VHLSERMEPFLLPGSGLDAAIHFLHPAWTGMQTYSLLDEVLVPVCHPALVAGTSGVPALD 185 Query: 181 AAETLLRSYRSDEWHRWFAAAAAPCP-PLRGFVFDSSLALAEAAAQEAGVALLPVMMFER 239 A L R D W R+ A +G +D L EAA GVAL+P + E Sbjct: 186 ALPRLHRRQNHDAWQRYAAQTGISLSHSAQGPRYDLHGMLIEAALAGLGVALVPRLYVET 245 Query: 240 ELRQGRLVCPFEQ 252 EL QGRLV P+ Q Sbjct: 246 ELAQGRLVAPWPQ 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 860,376 Number of extensions: 35530 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 56 Length of query: 287 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 203 Effective length of database: 1,222,130 Effective search space: 248092390 Effective search space used: 248092390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)