BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0161.p
         (106 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312647|ref|YP_003776739.1| 2-keto-4-pentenoate hydratase [...   163   3e-42

>gi|300312647|ref|YP_003776739.1| 2-keto-4-pentenoate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  163 bits (413), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 89/105 (84%)

Query: 1   MADLQSHGALIIGAAQPLPATLSLRQIAASLHIDGQEITRTTGGNPADLWPMLGWLALHC 60
           MADLQSHGAL+ GA Q LP  LSLRQI ASL IDGQ+++ TTGGNPADLWP+LGWLALHC
Sbjct: 142 MADLQSHGALVTGAPQALPDLLSLRQIEASLSIDGQQVSHTTGGNPADLWPLLGWLALHC 201

Query: 61  ARRGQPWCQGQVITTGSCTGLQLARAGRQIEGALAGIGAVSFSFA 105
           ARRGQPW  GQ+ITTGSCTGLQ+AR GR++E AL GIGAV   FA
Sbjct: 202 ARRGQPWRAGQIITTGSCTGLQMARGGRRVEAALHGIGAVWLDFA 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 375,012
Number of extensions: 15709
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 34
Effective length of database: 1,278,950
Effective search space: 43484300
Effective search space used: 43484300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)