BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0154.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312653|ref|YP_003776745.1| lipoprotein [Herbaspirillum ser...   295   2e-81

>gi|300312653|ref|YP_003776745.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 221

 Score =  295 bits (754), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/222 (68%), Positives = 185/222 (83%), Gaps = 9/222 (4%)

Query: 1   MMLDKFKALGAVLLALLASGCATK-QKPYDYAEFKAARPASILVLPPMNSSSEVIAPYGM 59
           M+  K K L A +L LLA+GCAT+ QKPYDYAEFKAARPASILVLPP+N+SSEVIAPYG+
Sbjct: 1   MIAGKCKVLAAAMLVLLATGCATQPQKPYDYAEFKAARPASILVLPPVNTSSEVIAPYGV 60

Query: 60  LAQATQPLT-------PLDKLASETFKQNGLANAADIHEVPVKKLREIFGADAGLYINIT 112
           LAQAT+PL        P+  LA+ TF+QNGL+N  +IHE+P  KLREIFGADA LYI IT
Sbjct: 61  LAQATEPLAESGYYVIPVS-LAAATFRQNGLSNPDEIHELPAPKLREIFGADAALYIKIT 119

Query: 113 DYGTSYKVVQSDTVVSADAKLVDLRSGKTLWQGSASASSAEGRQNQNNGLLGVLLSAVVN 172
            YGTSY+VVQS+T+V+A+A+LVDLRSGK LW+GSA ASS E +Q  +NGL+G+L+SAV+N
Sbjct: 120 RYGTSYQVVQSETLVAAEARLVDLRSGKLLWEGSARASSLEQQQQNSNGLIGMLVSAVIN 179

Query: 173 QIISTTTDASYKMASVTSNRLLRAGGNNGLLYGPRSPQYQKD 214
           QI++TT+DASYKMA + S RLLRAG  NGLL+GPRSPQYQKD
Sbjct: 180 QIVNTTSDASYKMAGIASQRLLRAGNPNGLLHGPRSPQYQKD 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 453,222
Number of extensions: 15266
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)