BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0152.p (606 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312655|ref|YP_003776747.1| C4-dicarboxylate transport sens... 991 0.0 gi|300310177|ref|YP_003774269.1| C4-dicarboxylate transport sens... 116 6e-27 gi|300313806|ref|YP_003777898.1| PAS/PAC HisKA ATPase_c domains ... 115 1e-26 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 96 1e-20 gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 93 5e-20 >gi|300312655|ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/602 (82%), Positives = 545/602 (90%), Gaps = 2/602 (0%) Query: 1 MRARRNLLILTLFLAATLLVCGLTYRIALGRAESDQQNQAAAQLQIAALDLESILQKYEA 60 MRARRNLLILTLFL ATLLVCG+TYR+AL +AE DQ+ Q AAQLQIAALDLESILQKYEA Sbjct: 1 MRARRNLLILTLFLVATLLVCGITYRLALRKAEVDQKTQGAAQLQIAALDLESILQKYEA 60 Query: 61 LPFALGFQSDVRQVLQHPEDALSVDRLNRAFKTIQQQSRAVNIFMLNRQGVTLASSNWDE 120 LPFALGFQ+DVRQVLQHP+D L+VDRLNRAFKTIQQQS+AV+IFML+R+G+TLASSNWD+ Sbjct: 61 LPFALGFQADVRQVLQHPDDVLAVDRLNRAFKTIQQQSQAVSIFMLDRRGLTLASSNWDD 120 Query: 121 EFSYVGRDFGFRPYFREAIQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM 180 EFS+VGRDFGFRPYF EA+QGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM Sbjct: 121 EFSFVGRDFGFRPYFSEAVQGRAGRFYGIGNISSEPGYFIAQPIYRRQDQAEGDLPIGVM 180 Query: 181 VVKVDLAEFEHTWRSSSDPITLTDAGGVVFLSNRPEWKYHSLQALSAPVQRELEGTHQYA 240 VVKVDLAEFEHTWRSS+DPITLTDAGGVVFLSNRPEWKYHSLQALS P+Q+ L GTHQYA Sbjct: 181 VVKVDLAEFEHTWRSSADPITLTDAGGVVFLSNRPEWKYHSLQALSPPMQQALAGTHQYA 240 Query: 241 DLPITPVSTLPPALQRGFGTHVSRPVGRLGWQLMLFPSQARMQRSAMLSAMAAALFMVAL 300 DLPITPVS LPPALQ GFG+HVSRPVGRLGWQLMLFPSQARMQR+AML MA AL M+AL Sbjct: 241 DLPITPVSALPPALQSGFGSHVSRPVGRLGWQLMLFPSQARMQRTAMLWTMACALLMLAL 300 Query: 301 AISLLAWYQHRRRLQERLASRNALRRAAEELDQKIAQRTQELTAANQAIAAKYAKLQQTE 360 AISLLAWYQHRRRL+ER+ASR+ALRRAA EL+Q+IA+RT +LTAANQA+ A+Y KLQQTE Sbjct: 301 AISLLAWYQHRRRLEERMASRDALRRAAAELEQRIAERTGQLTAANQALEARYEKLQQTE 360 Query: 361 SLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAENL 420 SLLRTTQ+ELVQAGKLAMLGQMAAG+THELNQPL AIRAFADN+VKFLARGQ+AQ ENL Sbjct: 361 SLLRTTQNELVQAGKLAMLGQMAAGVTHELNQPLTAIRAFADNAVKFLARGQSAQAVENL 420 Query: 421 EHISHASASMGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVETHIAMP 480 E+IS ASA+MGKII QLKGFARKSG+AVA VDL A+EAS LLAS+ +K I + Sbjct: 421 EYISSASATMGKIIAQLKGFARKSGEAVACVDLSQAIEASSLLLASECQKLGATISIDIR 480 Query: 481 LAVHVTGDAVRTEQVIVNLLRNALDAVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIA 540 A VTGD VRTEQV+VNLLRNALDAVEEA K + V+LEV A++RIRDSG GIA Sbjct: 481 AAACVTGDVVRTEQVLVNLLRNALDAVEEAEHKRIAVVLEVAG--GYALVRIRDSGGGIA 538 Query: 541 DEVVPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKT 600 DEV PHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHE+GGAEFVVRLPLLK Sbjct: 539 DEVAPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEEGGAEFVVRLPLLKM 598 Query: 601 EN 602 E Sbjct: 599 ET 600 >gi|300310177|ref|YP_003774269.1| C4-dicarboxylate transport sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 674 Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/248 (31%), Positives = 130/248 (52%), Gaps = 10/248 (4%) Query: 357 QQTESLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQV 416 ++ E L RT +++L + +LA +G++A+ + HELNQPLAAI ++ ++ + +GQ Sbjct: 423 KRAEDLNRTQEEKLQASARLASMGEIASTLAHELNQPLAAISSYTTGALNLMQQGQADPK 482 Query: 417 A--ENLEHISHASASMGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFEKQEVE 474 A LE I + G +I + F +K A V +R ++ L+ ++ V Sbjct: 483 ALQPALEKIHAQAQRAGHVIRSVHQFVKKREPARQRVQMRQLIDNVAPLIELQAQQFFVV 542 Query: 475 THIAMPLAV-HVTGDAVRTEQVIVNLLRNALDAVEEAP--RKCVCVILEVDAERQQA--- 528 + +P ++ V GD + EQVI+NL RN + A+ P R+ + V EV A Sbjct: 543 LQLQVPRSLPPVLGDQILLEQVILNLTRNGIQAMAAVPSARRILRVAAEVTRNEDGAESV 602 Query: 529 VLRIRDSGAGIADEVVPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGG 588 + + D G GI D+V LF PFF+TK ++G+G+GL I + ++ G L+ ++ GG Sbjct: 603 TVSVTDQGHGIPDDVAARLFSPFFSTK--AEGMGMGLNICRTTIEFHGGTLTYTDNPAGG 660 Query: 589 AEFVVRLP 596 F LP Sbjct: 661 TIFRFSLP 668 >gi|300313806|ref|YP_003777898.1| PAS/PAC HisKA ATPase_c domains containing sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 524 Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 16/249 (6%) Query: 357 QQTESLLRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQV 416 +Q E +R Q ++ + + +GQ+ A + HE+NQPL +I A A S+++L R Sbjct: 280 RQNEYAIRAAQIDMERVSRANTVGQLTASIAHEINQPLMSIVANAGASLRWLDRP----- 334 Query: 417 AENLEH-------ISHASASMGKIIGQLKGFARKSGQAVAAVDLRHAVEASLRLLASDFE 469 +LEH I G II L+ R + V+L + L L S+ E Sbjct: 335 VPDLEHARTGLRDIIAEGQRAGGIISGLRDLTRNAAPVCERVNLHAVIRHILTLSRSELE 394 Query: 470 KQEVETHIAM-PLAVHVTGDAVRTEQVIVNLLRNALDAVEEAPRKC-VCVILEVDAERQQ 527 ++EV +++ P V GD V+ +QV++NL+ NA++A+ P V I + Q+ Sbjct: 395 RREVSLLLSLTPADAFVLGDQVQLQQVMLNLVVNAIEAMSSMPEHARVLSITASSCDEQR 454 Query: 528 AVLRIRDSGAGIADEVVPHLFEPFFTTKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQG 587 ++++DSG GIA E + +F+ F+TTK S G+G+GLAI SI++ G+L + Sbjct: 455 IEVKVQDSGEGIAPEAMRRVFDAFYTTKDS--GMGMGLAICRSIIENHRGRLRVAAAQPH 512 Query: 588 GAEFVVRLP 596 GA F LP Sbjct: 513 GALFSFDLP 521 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 127/272 (46%), Gaps = 44/272 (16%) Query: 363 LRTTQDELVQAGKLAMLGQMAAGMTHELNQPLAAIRAFAD---NSV-------------- 405 L+ Q +L+Q+ KLA +GQ+AAG+ HE+N P+ + A + N V Sbjct: 171 LKMAQAQLMQSEKLASIGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCLQ 230 Query: 406 --------------KFLARGQTAQVAENL-EHISHASASMGK---IIGQLKGFARKSGQA 447 F AR A ++E++ E ++ ++ + + I+ LK F+R Sbjct: 231 GGALPAAMAQEQLRSFEARADLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESN 290 Query: 448 VAAVDLRHAVEASLRLLASD--FEKQEVETHIAMPLAVHVTGDAVRTEQVIVNLLRNALD 505 DL ++++L + ++ ++ V+ + +PL V A QV +NLL NA Sbjct: 291 WQMTDLHRGLDSTLNIANNELKYKVSIVKQYGELPL---VKCLASELNQVFMNLLVNAAQ 347 Query: 506 AVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIADEVVPHLFEPFFTTKSSSKGLGLGL 565 A+ E +C D + + I D+G GIA E + +FEPFFTTK G GLGL Sbjct: 348 AISERGTVTICTARAGD----KVSVSISDTGHGIAPENLNRIFEPFFTTKPVGSGTGLGL 403 Query: 566 AISSSIVQAMNGQLSAHNHEQGGAEFVVRLPL 597 ++S IV+ G + + G F + LP+ Sbjct: 404 SLSYGIVKKHGGDIRVSSAPGCGTTFTIELPI 435 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 155/351 (44%), Gaps = 54/351 (15%) Query: 266 VGRLGWQLMLFPSQARMQRSAMLSAMAAALFMVALAISLLAWYQHRRRLQERLAS-RNAL 324 +G G + M FP+ + A+L+++ AL LLAWY + +NA Sbjct: 153 IGERGPKSMFFPTMPIV--VALLASLVFAL--------LLAWY-----FSHPIGHLKNAF 197 Query: 325 RRAAE-----ELDQKIAQRTQELTAANQAIAAKYAKLQQ-TESLLRTTQDELVQAGKLAM 378 +AA EL+ ++ R EL + AKL+ ES R D Sbjct: 198 NQAANGNLDLELEPVMSARNDELADLGRDFDVMTAKLRTLMESQRRLLHD---------- 247 Query: 379 LGQMAAGMTHELNQPLAAIRAFADNSVKFLARGQTAQVAE-NLEHISHASASMGKIIGQL 437 ++HEL P+A ++ LAR Q + LE I S M K++G+L Sbjct: 248 -------VSHELRSPIARLQVAIG-----LARVQDKDKLDLTLERIERESVRMDKLVGEL 295 Query: 438 KGFARKSGQAVAAVDLRHAVEASLRLLASD--FEKQEVETHIA--MPLAVHVTGDAVRTE 493 +R +++ A+EA L + +D FE + + H+ + V V G+ Sbjct: 296 LTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQVKGNPELLY 355 Query: 494 QVIVNLLRNALDAVEEAPRKCVCVILEVDAERQQAVLRIRDSGAGIADEVVPHLFEPFFT 553 + I N+LRNA+ AP V + ++D + L I D G G+ +E + +FE FF Sbjct: 356 RAIENVLRNAIK--HTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSIFELFFR 413 Query: 554 ---TKSSSKGLGLGLAISSSIVQAMNGQLSAHNHEQGGAEFVVRLPLLKTE 601 TKS+S G GLGL+I+ IV+A G + A N GG + LP + E Sbjct: 414 SSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADE 464 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,572,844 Number of extensions: 61659 Number of successful extensions: 367 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 334 Number of HSP's successfully gapped: 34 Length of query: 606 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 515 Effective length of database: 1,188,985 Effective search space: 612327275 Effective search space used: 612327275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)