BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0146.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312663|ref|YP_003776755.1| lipoprotein [Herbaspirillum ser...   374   e-105

>gi|300312663|ref|YP_003776755.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 197

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/197 (95%), Positives = 196/197 (99%)

Query: 1   MKKLFAWLAIAMTALTLSGCGYNEFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60
           MKKLFAWLAIA+TALTLSGCGYN+FQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY
Sbjct: 1   MKKLFAWLAIALTALTLSGCGYNDFQAKDEATKAAWGEVVNQYQRRADLIPNLVNTVKGY 60

Query: 61  ASHEKDTLEAVTRARAAATSFQITPEVLNDPKAFAKFQEVQGQLSSALSRLMAVSENYPQ 120
           A+HEKDTLEAVTRARAAATSFQITPEVLNDPKAFA+FQEVQGQLSSALSRLMAVSENYPQ
Sbjct: 61  AAHEKDTLEAVTRARAAATSFQITPEVLNDPKAFARFQEVQGQLSSALSRLMAVSENYPQ 120

Query: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVKDYNILARSFPTNITAKLFSYEVKPSFT 180
           LKADTSFRDLQSQLEGTENRITVARQRYIAAV+DYNILARSFPTN+TAKLF+YEVKPSFT
Sbjct: 121 LKADTSFRDLQSQLEGTENRITVARQRYIAAVRDYNILARSFPTNLTAKLFNYEVKPSFT 180

Query: 181 VENEKAISTAPAVNFGK 197
           VENEKAISTAP VNFGK
Sbjct: 181 VENEKAISTAPTVNFGK 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 506,620
Number of extensions: 16203
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)