BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0144.p
         (177 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillu...   286   7e-79

>gi|300312665|ref|YP_003776757.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 177

 Score =  286 bits (732), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 157/177 (88%)

Query: 1   MANNNASPSLFARLLRHLRMTRAAARRIFPSSTLKAIQASIGEGERQHRAQVRVIVEAAL 60
           M +NN SPSL ARLL HLRMTRAAARR FPS+TLKAIQASIG GER+HRAQVRVIVEAAL
Sbjct: 1   MPHNNTSPSLPARLLHHLRMTRAAARRAFPSTTLKAIQASIGAGEREHRAQVRVIVEAAL 60

Query: 61  TLGAVRRGESARQRAHELFSLYRIWDTEENCGVLVYVNLADRKVEIVADRGINACVTREQ 120
           +LGAVRRG+SARQRAHELFS YRIWDTEENCGVLVY+NLADRKVEIVADRG+NA VTREQ
Sbjct: 61  SLGAVRRGDSARQRAHELFSHYRIWDTEENCGVLVYINLADRKVEIVADRGVNARVTREQ 120

Query: 121 WQQVCRQMTAGYARGDYEASTLQALAALHALLESVLPRRNDGNAKATNELSDKPLLL 177
           WQQVCR MTAGYA+G+YEASTLQALA+LH +L  VLPR  D      NELSDKPLLL
Sbjct: 121 WQQVCRAMTAGYAQGEYEASTLQALASLHEILRKVLPREPDAAGDMHNELSDKPLLL 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 465,987
Number of extensions: 15400
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 98
Effective length of database: 1,245,805
Effective search space: 122088890
Effective search space used: 122088890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)