BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0142.p
         (393 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273...    57   4e-09

>gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 45/296 (15%)

Query: 18  GMSRQTFSADYQEKQPLLIRNAVHHIDFSWTDACEILERCHVDDPSFKLSYHGSILPKKD 77
           G++   F  DY  K+PLLIRNA+           E+ +    DD   +L  H        
Sbjct: 22  GITPAQFLRDYWHKKPLLIRNAIPGFSAPLPRQ-ELFDLSRRDDVESRLITH-------- 72

Query: 78  YVERYLDVGTPSYRLIKPVVYDYMRKGATLIANRIK-HEPKVSAFARAVGEFTGRQV--V 134
             E   D+    +  + P+     +K  TL+   +  H P   A  R        ++  +
Sbjct: 73  -REGGWDMQHGPFNKLPPL----KQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDL 127

Query: 135 SSAYAAFGHHSSFRSHWDTRDVFAVQLIGRKRWLIYAPTFEFPLSHQQSRDYELTFPHSS 194
             +YA+ G       H+D+ DVF +Q  G++RW I A   +  L+ ++    ++     +
Sbjct: 128 MISYASDG--GGVGPHFDSYDVFLLQAHGQRRWRISA---QDDLTLEEGVPLKILSHFQA 182

Query: 195 EPYLDLVLEPGDVLYVPRGWWHDPLPLGEGCFHLALGTFPPYVADYLRWATHQ-IQENVL 253
           E   + VLEPGD+LY+P  + HD + +GE C   ++G          R  T+Q + E+ L
Sbjct: 183 EE--EFVLEPGDMLYLPPHYAHDGVAVGE-CMTYSIG---------FRAPTYQELGESFL 230

Query: 254 ARRSLDTWEFEQELLEKAAQEMAHFIRSSENYAQFMDEYCAHVRDESALDLGRFAD 309
                   EF  + ++   +     +++S   A+   +  A +RDE  L+  RF D
Sbjct: 231 --------EFMMDTIDLPGRYADPDLKTSARPAELQADMIARIRDE--LNKIRFTD 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,268,795
Number of extensions: 55616
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,207,925
Effective search space: 369625050
Effective search space used: 369625050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)