BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0139.p (606 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol... 439 e-124 gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas... 254 1e-68 gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas... 230 2e-61 gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC trans... 217 2e-57 gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas... 212 8e-56 >gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein [Herbaspirillum seropedicae SmR1] Length = 726 Score = 439 bits (1129), Expect = e-124, Method: Compositional matrix adjust. Identities = 241/580 (41%), Positives = 371/580 (63%), Gaps = 14/580 (2%) Query: 19 EQDSNFDLRELMRPLLDRRSAAAEILLASLALQVFALAVPLFSQVIIDKVLNHRNLASLH 78 ++ S FD + ++ R AE+LL SL LQ+ L P+F QV++DKVL + + +L+ Sbjct: 142 QESSRFDFSWFIPAVVKYRKTLAEVLLISLVLQLIGLITPMFFQVVMDKVLVNHAMMTLN 201 Query: 79 VLGVAMMVLIGFEATFMILRARLLAHVSSHLDALLGMRVVRHLLRLPLRYFESRSIGILL 138 V+ V ++ FEA +R + A+ SS +D LG R+ HLL LPL YF+ R G + Sbjct: 202 VIAVGLIAATVFEAVLTGIRTAIFANASSKIDVELGSRLFSHLLSLPLSYFQVRRAGDSI 261 Query: 139 SQVKEMESIRQILAGSSISGLVDLIFTVVFVAVMFSYSATLAMVVLLAVPVLIAFSLGVR 198 ++V+E+E+IR L G++++ ++D++F+ VF+ VM YS +L+++VL ++PV + SL Sbjct: 262 ARVRELENIRSFLTGNAMTLVLDIMFSFVFLGVMLWYSVSLSLIVLASIPVYVLLSLVFT 321 Query: 199 PLMRRSLARKHAMATRASSVLLELVSGIHAIKALAIENAMLARWQQALSEQVSATREGGG 258 PL+R L K + S L+E ++G+ +KA+A+E RWQQ +Q++A G Sbjct: 322 PLLRERLNDKFNKSAENQSFLVETLTGMDTVKAMAVE----PRWQQKWDKQLAAY-VAAG 376 Query: 259 LSSMNAAFNL-----LVQRAVVLAVLWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVSHV 313 L++ N + LV + V + ++WLGA LV+ +++VG+++AF MLA + P+ + Sbjct: 377 LTTTNISLLASGAVGLVSKLVTVGIMWLGALLVVKNEMSVGELVAFNMLAGQVASPILRL 436 Query: 314 VQVWQELQQLSLSSDALGQIMNVRSEEDAGSMRPAAGEIKGDVQLVDLVFRYCPQSPVVL 373 Q+W + QQ+ +S L +++ R+E AG+ R + G + + FRY P++P V+ Sbjct: 437 AQLWNDFQQIGISMSRLADVLDARTEV-AGN-RTRLPRVNGAISFDLVSFRYRPETPEVI 494 Query: 374 EDIFLAAGPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGQILVDGIDIGRYDPCTLRERI 433 + L PG++IGIVGRSG GKSTLAKL+ LY G+I VDG DI D +LR++I Sbjct: 495 RGLSLQIRPGEVIGIVGRSGSGKSTLAKLVQRLYICETGRISVDGQDIAIIDTASLRQQI 554 Query: 434 SVVPQDIFLFSGTIGENIAISDGNTDLDAIAAAAELADAHAFIMALPQGYDTLIGERGGI 493 VV Q+ LFS +I +NIA++D +T ++ I AA+LA AH FI LP+GYDT++GE+G Sbjct: 555 GVVLQENTLFSRSIRDNIALADPSTPIEQIIEAAKLAGAHDFICELPEGYDTMVGEQGS- 613 Query: 494 LLSGGQRQKIAIARAVYARPRILILDEATSALDHESERRVQNNLRKAFLHCTVFVIAHRL 553 LSGGQRQ+IAIARA+ P ILI DEATSALD+ESE+ +Q+N+R+ TV +IAHRL Sbjct: 614 GLSGGQRQRIAIARALITNPGILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRL 673 Query: 554 STVRHASKIMVLDRGRFVETGKHEELMQ-RDGLYRRLYTM 592 S VR A +I+V++RGR E+G H+EL+ G+Y L+ + Sbjct: 674 SAVRDADRIIVMERGRVAESGSHDELIDLPGGIYAHLHRL 713 >gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 758 Score = 254 bits (649), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 183/544 (33%), Positives = 293/544 (53%), Gaps = 17/544 (3%) Query: 55 LAVPLFSQVII---DKVLNHRNLASLHV---LGVAMMVL-IGFEATFMILRARLLAHVSS 107 + +PL V+I + +LA+L++ LG A++ +G+ T+ +LA VS Sbjct: 202 MTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLAWGLGWARTY------ILALVSE 255 Query: 108 HLDALLGMRVVRHLLRLPLRYFESRSIGILLSQV-KEMESIRQILAGSSISGLVDLIFTV 166 + A L HLLRL YF + G L++++ E + I L+ + +D++ + Sbjct: 256 RIGADLRTTTYSHLLRLSQEYFGGKRTGDLMARIGSETDRICVFLSLHLLDFAIDVLMII 315 Query: 167 VFVAVMFSYSATLAMVVLLAVPVLIAFSLGVRPLMRRSLARKHAMATRASSVLLELVSGI 226 + A++ S + LA+V LL +P + VR +R + + + ++VL + + GI Sbjct: 316 MTAAILISINPWLALVTLLPLPFIAWMIHVVRDRLRHGFEKIDRIWSEVTNVLADTIPGI 375 Query: 227 HAIKALAIENAMLARWQQALSEQVSATREGGGLSSMNAAFNLLVQRAVVLAVLWLGAHLV 286 +KA A E +AR+++A + + S+ + +L V G V Sbjct: 376 RVVKAFAQEKREVARFREANRHNLMVNDRVNKIWSLFTPTVTFLTEVGLLVVWVFGIWQV 435 Query: 287 LDGQLTVGQVIAFQMLALRFIHPVSHVVQVWQELQQLSLSSDALGQIMNVRSEEDAGSMR 346 Q+TVG + AF RF + + ++ Q+ + + + I++ S + Sbjct: 436 SSNQITVGVLTAFLAYISRFYTRLDSMSRIVSVTQKAAAGAKRIFDILDHVSSVPEPANP 495 Query: 347 PAAGEIKGDVQLVDLVFRYCPQSPVVLEDIFLAAGPGDIIGIVGRSGGGKSTLAKLLHGL 406 +++G +++ ++ FRY ++ V+ ++ L+ PG++IG+VG SG GKST+ L+ Sbjct: 496 VHLEKVQGAIEVRNIGFRYGNRA--VIRNMSLSIAPGEMIGLVGHSGSGKSTMVNLICRF 553 Query: 407 YRPTQGQILVDGIDIGRYDPCTLRERISVVPQDIFLFSGTIGENIAISDGNTDLDAIAAA 466 Y ++G I +DG+DI R I +V Q+ FLF GTI ENIA + I AA Sbjct: 554 YDVSEGAIRIDGVDIRSLPISEYRRNIGLVLQEPFLFFGTIAENIAYGKPEATREEIIAA 613 Query: 467 AELADAHAFIMALPQGYDTLIGERGGILLSGGQRQKIAIARAVYARPRILILDEATSALD 526 A A AH FI+ LPQGYD+L+GERG LSGG+RQ+I+IARA+ PRILILDEATS++D Sbjct: 614 ARAAHAHEFILRLPQGYDSLVGERGQA-LSGGERQRISIARALLIDPRILILDEATSSVD 672 Query: 527 HESERRVQNNLRKAFLHCTVFVIAHRLSTVRHASKIMVLDRGRFVETGKHEELMQRDGLY 586 +E+ +Q L T IAHRLST+R A +++VLDRG+ VE G HEELM R+G Y Sbjct: 673 TTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVGNHEELMAREGHY 732 Query: 587 RRLY 590 +LY Sbjct: 733 YKLY 736 >gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 614 Score = 230 bits (587), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 190/541 (35%), Positives = 285/541 (52%), Gaps = 23/541 (4%) Query: 66 DKVLNHRNLASLHVLGVAMMVLIGFEATFMILRARLLAHVSSHLDALLGMRVVRHLLRLP 125 K +H NL L + GVA ++ + LR +++ + + A L V H++ Sbjct: 84 SKSASHINLYFLALFGVACILGVA-----TALRFYMVSWLGERVTADLRSAVYAHVVTQS 138 Query: 126 LRYFESRSIGILLSQVKEMESIRQILAGSSIS-GLVDLIFTVVFVAVMFSYSATLA--MV 182 +FE+ G +LS++ ++ Q L G+SIS L + + + ++++F SA L ++ Sbjct: 139 PEFFETTKTGEVLSRLTTDTTLIQTLVGTSISMALRNALLFIGGMSMLFFTSARLTSIII 198 Query: 183 VLLAVPVL--IAFSLGVRPLMRRSLARKHAMATRASSVLLELVSGIHAIKALAIENAMLA 240 V+LA VL + + VR L R S R AS++ E+++ + ++A E Sbjct: 199 VMLAAVVLPIVFYGRRVRKLSRASQDR----VADASAMAGEILNAMPTVQAFTHEEIEAR 254 Query: 241 RWQQALSEQVSATREGGGLSSMNAAFNLLVQRAVVLAVLWLGAHLVLDGQLTVGQVIAFQ 300 R+ Q++ E S+ +L+ ++ VLWLGAH V++G ++ G++ F Sbjct: 255 RFAQSVERAFGTAMERVRARSLLTVVAILLVFGAIVFVLWLGAHAVMEGSMSGGELGQFI 314 Query: 301 MLALRFIHPVSHVVQVWQELQQLSLSSDALGQIMNVRSE------EDAGSMRPAAGEIKG 354 + A + + +V + Q+ + +++ L ++ S + R A G Sbjct: 315 LYASLVAGSLGALSEVMGDTQRAAGATERLLDLLAAHSPVQSVLLPEKLPPRTANGAAL- 373 Query: 355 DVQLVDLVFRYCPQSPVVLEDIFLAAGPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGQI 414 VQ VD + P P L + L PG+ + IVG SG GK+TL +LL Y P QGQI Sbjct: 374 TVQGVDFHYPSRPGHPS-LTQLSLTVQPGETVAIVGPSGAGKTTLFQLLLRFYDPQQGQI 432 Query: 415 LVDGIDIGRYDPCTLRERISVVPQDIFLFSGTIGENIAISDGNTDLDAIAAAAELADAHA 474 L+DG+DI D LR I +VPQD +FS ENI + AAA++A AH Sbjct: 433 LLDGVDIRYLDLQALRGAIGIVPQDTVIFSANAMENIRFGRPEASDAEVIAAAQMAAAHE 492 Query: 475 FIMALPQGYDTLIGERGGILLSGGQRQKIAIARAVYARPRILILDEATSALDHESERRVQ 534 FI LP Y +GERG + LSGGQRQ+IAIARA+ P +L+LDEATSALD ESER VQ Sbjct: 493 FIERLPGSYACFLGERG-VRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQ 551 Query: 535 NNLRKAFLHCTVFVIAHRLSTVRHASKIMVLDRGRFVETGKHEELMQRDGLYRRLYTMDG 594 L A + T VIAHRL+TV+ A +I+VL+ GR VE+G H EL+ RDGLY L + Sbjct: 552 GALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAELVARDGLYAGLAALQF 611 Query: 595 Q 595 Q Sbjct: 612 Q 612 >gi|300313154|ref|YP_003777246.1| Fe-S cluster assembly ABC transporter permease/ATPase [Herbaspirillum seropedicae SmR1] Length = 634 Score = 217 bits (552), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 164/521 (31%), Positives = 262/521 (50%), Gaps = 23/521 (4%) Query: 92 ATFMILRARLLAHVSSHLDALLGMRVVRHLLRLPLRYFESRSIGILLSQVKE-MESIRQI 150 A F LR + A V+ + ++V RHL L LR+ +R G + ++ + + Sbjct: 96 ALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRGVSSL 155 Query: 151 LAGSSISGLVDLIFTVVFVAVMFS-YSATLAMVVLLAVPVLIAFSLGV---RPLMRRSLA 206 ++ + S L LI + +A + + Y +++ A+ I F++ V R RR++ Sbjct: 156 VSYTLFSILPTLIEIALVLAYLITHYDVWFSVITAGALVCYILFTITVTEWRTHFRRTMN 215 Query: 207 RKHAMA-TRASSVLLELVSGIHAIKALAIENAMLARWQQALSE-QVSATREGGGLSSMNA 264 + A TRA LL +K E R+ + L + +A + LS +N Sbjct: 216 ELDSHANTRAIDSLLNY----ETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNT 271 Query: 265 AFNLLVQRAVVLAVLWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVSHVVQVWQELQQLS 324 + ++ AV L +LW V+DG +T+G ++ ++ P++ + +++E++Q Sbjct: 272 GQSAIIAIAVTL-ILWRATVGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSL 330 Query: 325 LSSDALGQIMNVRSE----EDAGSMRPAAGEIKGDVQLVDLVFRYCPQSPVVLEDIFLAA 380 + L ++ E DA ++ + D VD + Q +L D+ Sbjct: 331 ADMERLFSLLEEHREVADSADAKPLKTQGANLHFD--HVDFSYERNRQ---ILFDVDFTV 385 Query: 381 GPGDIIGIVGRSGGGKSTLAKLLHGLYRPTQGQILVDGIDIGRYDPCTLRERISVVPQDI 440 G +VG SG GKSTL++LL+ Y G I +DG D+ +LR+ I +VPQD Sbjct: 386 QAGTTTAVVGHSGSGKSTLSRLLYRFYDVDAGAIRIDGQDLRTVTQASLRQAIGIVPQDT 445 Query: 441 FLFSGTIGENIAISDGNTDLDAIAAAAELADAHAFIMALPQGYDTLIGERGGILLSGGQR 500 LF+ TI NIA + I AAA+ A H FI +LP GY +++GERG + LSGG++ Sbjct: 446 VLFNDTIEYNIAYGKPGATREQIVAAAKAAYIHDFIESLPDGYASMVGERG-LKLSGGEK 504 Query: 501 QKIAIARAVYARPRILILDEATSALDHESERRVQNNLRKAFLHCTVFVIAHRLSTVRHAS 560 Q++AIAR + P ILI DEATSALD +E+ +Q L + T VIAHRLST+ +A Sbjct: 505 QRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAQ 564 Query: 561 KIMVLDRGRFVETGKHEELMQRDGLYRRLY-TMDGQQDQEG 600 +I+VLD GR VE G H L+ GLY +++ D+EG Sbjct: 565 QILVLDHGRIVERGTHAGLLMAGGLYAQMWLRQQAGADEEG 605 >gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 212 bits (539), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 175/558 (31%), Positives = 282/558 (50%), Gaps = 38/558 (6%) Query: 57 VPLFSQVIIDKVLNHRNLASLHVLGVAMMVLIGFEATFMILRARLLAHVSSHLDALLGMR 116 VP QV++DK + SL ++ VA++ + + ++ VS+ + L + Sbjct: 37 VPYIFQVLLDKGFVGKPAFSLWLVPVAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQ 96 Query: 117 VVRHLLRLPLRYFESRSIGILLSQVKEMESIRQILAGSSISGLVDLIFTVVFVAVM---- 172 + +L LPL ++ + ++G +++ + M ++QI+ +V +FT + + + Sbjct: 97 MFARMLDLPLHFYATNTVGKVINSM--MFEVQQII------DMVTKVFTSILRSALTVLG 148 Query: 173 -------FSYSATLAMVVLLAVPVLIAFSLGVR--PLMRRSLARKHAMATRASSVLLELV 223 ++ T+ +VLL + L+ + G R L R SLA M + V+ E Sbjct: 149 LLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKRLKKLNRDSLAVNAEM----TQVIEETT 204 Query: 224 SGIHAIKALAIENAMLARWQQALSEQVSAT-REGGGLSSMNAAFNLLVQRAV----VLAV 278 IK ++ R+ + S T R SS L+ AV V+A+ Sbjct: 205 RAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAFSSTVPITQLMTATAVAVVIVMAL 264 Query: 279 LWLGAHLVLDGQLTVGQVIAFQMLALRFIHPVSHVVQVWQELQQLSLSSDALGQIMNVRS 338 + G +GQ+TVG ++F L + P+ + ++ LQ+ +++ + ++++ + Sbjct: 265 IQSG-----NGQITVGGFVSFITAMLMLLTPLKQLAEINGPLQRGMAAAEEVYKLIDKTT 319 Query: 339 EEDAGSMRPAAGEIKGDVQLVDLVFRYCPQSPVVLEDIFLAAGPGDIIGIVGRSGGGKST 398 E G AG G + V++ F Y + L++I L G+ I VG SGGGKST Sbjct: 320 ERITG--EALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEAGETIAFVGMSGGGKST 377 Query: 399 LAKLLHGLYRPTQGQILVDGIDIGRYDPCTLRERISVVPQDIFLFSGTIGENIAISDGNT 458 L L+ G Y + G+I +DG DI +LR++I++V Q+ LF T+ NIA D N Sbjct: 378 LVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVLFDDTLAANIAYGDANP 437 Query: 459 DLDAIAAAAELADAHAFIMALPQGYDTLIGERGGILLSGGQRQKIAIARAVYARPRILIL 518 D + AA E A + LP+G T +G+ G LSGGQRQ++AIARA+Y ILIL Sbjct: 438 DPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGS-RLSGGQRQRVAIARAIYKDAPILIL 496 Query: 519 DEATSALDHESERRVQNNLRKAFLHCTVFVIAHRLSTVRHASKIMVLDRGRFVETGKHEE 578 DEATSALD ESER VQ L + T FVIAHRLST+ A +I+VL G+ E G H+ Sbjct: 497 DEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIGTHQA 556 Query: 579 LMQRDGLYRRLYTMDGQQ 596 L++++G+Y LY + Q Sbjct: 557 LLEQEGVYANLYRLQFSQ 574 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,605,690 Number of extensions: 61601 Number of successful extensions: 624 Number of sequences better than 1.0e-08: 107 Number of HSP's gapped: 523 Number of HSP's successfully gapped: 114 Length of query: 606 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 515 Effective length of database: 1,188,985 Effective search space: 612327275 Effective search space used: 612327275 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)