BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0138.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine carboxipepti...   821   0.0  

>gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine
           carboxipeptidase 3 (S13) family signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/463 (86%), Positives = 426/463 (92%), Gaps = 13/463 (2%)

Query: 38  AQGLPPSVVGALRVAHIPQQNTGVVVVDADNGKRMLAANNTGQPFNPASVMKLVTTDAAL 97
           AQ LPP+VVGALRVAHIPQQNTGV+V+D +  KR+L +NN GQPFNPASVMKLVTTDAAL
Sbjct: 35  AQSLPPAVVGALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAAL 94

Query: 98  EILGPTYTWKTQAYIDGTLAGGVLNGDLILKGGGDPKLVLENFWLFLRQLRARGIKDIRG 157
           E+LGPT+TWKTQAYIDGTL+GGVLNGDLILKGGGDPKLVLENFWL LRQLRARGI+DIRG
Sbjct: 95  EMLGPTFTWKTQAYIDGTLSGGVLNGDLILKGGGDPKLVLENFWLLLRQLRARGIQDIRG 154

Query: 158 NLVLDRTYFAESSYDPSQFDGDPQKPYNAGPDALLMNYRTQAFRFEPDAASGVVSVSMDP 217
           NLVLDR+YFA SSYDP+QFDGDPQKPYNAGPDALL+NYRTQAFRFEPDAASG VSVSMDP
Sbjct: 155 NLVLDRSYFAPSSYDPAQFDGDPQKPYNAGPDALLLNYRTQAFRFEPDAASGTVSVSMDP 214

Query: 218 PMAGITVTPPRLSQEPCGDWQGKLKMNNDPNAVSFTGSYSADCGPRVWYVHPYRMNNVQY 277
           PMAG T+TPPRLSQEPCGDWQGKL +NND +  +F+GSYSADCG RVWYVHPYRM+NVQY
Sbjct: 215 PMAGFTITPPRLSQEPCGDWQGKLMLNNDASGATFSGSYSADCGARVWYVHPYRMSNVQY 274

Query: 278 VGASFVQMWADLGGSFAGRVVNGQVMPSARLMVEVQSPPLPEVIRDINKYSNNVMARQVL 337
           VGASF QMWADLGG FAGRV++GQV PSAR+MVEVQSP LPEVIRDINKYSNNVMARQVL
Sbjct: 275 VGASFAQMWADLGGRFAGRVLDGQVTPSARMMVEVQSPALPEVIRDINKYSNNVMARQVL 334

Query: 338 LTLGAEMTGQPGDTVNAARVPSLGVFGGKSARAVRGWLNDKGIDTNGLAIENGAGLSRVE 397
           LTLGAEMTGQPGD VNA             ARAVRGWL DKGIDTNGLAIENGAGLSR+E
Sbjct: 335 LTLGAEMTGQPGDPVNA-------------ARAVRGWLGDKGIDTNGLAIENGAGLSRIE 381

Query: 398 RVTPALLASVLVQAYRSPLMPEFVSSLPLVGYDGTMRRRLKTQSVAGQAHIKTGTLNDVR 457
           RVTP LLA+VL+QA+RSPLMPEFVSSLPLVGYDGTMRRRLKTQ VAGQAHIKTGTLNDVR
Sbjct: 382 RVTPGLLANVLLQAWRSPLMPEFVSSLPLVGYDGTMRRRLKTQGVAGQAHIKTGTLNDVR 441

Query: 458 SIAGYVQAASGKTYVVVFLINHAAAPNGQQAQDALLQWVYENG 500
           SIAGYVQAASGKTYVVVFLINH AAPNGQ+AQDALLQWVYENG
Sbjct: 442 SIAGYVQAASGKTYVVVFLINHPAAPNGQKAQDALLQWVYENG 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,668,088
Number of extensions: 74896
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)