BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0129.p (372 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312674|ref|YP_003776766.1| two-component system transcript... 697 0.0 gi|300312803|ref|YP_003776895.1| two component sensor histidine ... 155 5e-39 gi|300311807|ref|YP_003775899.1| light-regulated signal transduc... 121 1e-28 gi|300313030|ref|YP_003777122.1| two component response regulato... 74 2e-14 gi|300311949|ref|YP_003776041.1| two component response regulato... 74 2e-14 >gi|300312674|ref|YP_003776766.1| two-component system transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/372 (92%), Positives = 358/372 (96%) Query: 1 VTEKYKDRDLPRVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHDVALA 60 +TE++KDRDLPRVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLL H+VALA Sbjct: 1 MTEQHKDRDLPRVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLVHEVALA 60 Query: 61 FLDVQMPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEP 120 F+DVQMPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERR FKGYESGAVDFLYKPIEP Sbjct: 61 FIDVQMPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEP 120 Query: 121 HILRNKADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQ 180 HILRNKA+VFFQLYRQKQ LALEL++RTETLR+NEMFVAILGHDLRNPLSAV+MAATLLQ Sbjct: 121 HILRNKAEVFFQLYRQKQQLALELRERTETLRLNEMFVAILGHDLRNPLSAVMMAATLLQ 180 Query: 181 RTYKEEVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQE 240 RTYKEEVAQKASQQILNGGKRMAKLI+NMLDLARARLAGGIPL RASACLGEITERVVQE Sbjct: 181 RTYKEEVAQKASQQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQE 240 Query: 241 YQATYPGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEEEV 300 YQATYPGSV+ERRIEGDDNGYWDGDRL QV ANLLGNALQHG PICIGIDGRSE EV Sbjct: 241 YQATYPGSVIERRIEGDDNGYWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEV 300 Query: 301 VMTIANRGVIPAALLPVIFDPFRGGEREVGRKEGLGLGLFIAQQIVKSHGGSITMSSDDQ 360 VM IANRGVIPA LLPVIFDPFRGGERE GRKEGLGLGLFIAQQIVK+HGGSI+MSSDDQ Sbjct: 301 VMVIANRGVIPADLLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQ 360 Query: 361 VQTMVTVRLPRR 372 +QTMVTVRLPRR Sbjct: 361 LQTMVTVRLPRR 372 >gi|300312803|ref|YP_003776895.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 155 bits (392), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 143/241 (59%), Gaps = 8/241 (3%) Query: 138 QLLALELKQRTETL-RMNEMFVAILGHDLRNPLSAVVMAATLLQRTYK-EEVAQKASQQI 195 Q LA L + T+ L + +F+AILGHDLRNPL A + A ++ ++ +K + +I Sbjct: 140 QALAESLARYTKLLDQSRNLFLAILGHDLRNPLGATIHGAQIMLLAEDIDDRHRKIAARI 199 Query: 196 LNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATYPGSVVERRIE 255 N G+RM+KL+ ++LD R L G+PL +SA +G+I +RV+ E ++P V+ + Sbjct: 200 YNSGQRMSKLVADLLDYTRTHLGSGLPLEISSANVGDIAQRVIDEISTSHPDKVITLKTS 259 Query: 256 GDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEEEVVMTIANRG-VIPAAL 314 G+ NG WD +R+ Q ++NLLGNA+QHGA I + I S EV + I N+G +IP Sbjct: 260 GELNGEWDKERIAQAISNLLGNAVQHGATGEAIKVEISA-SRGEVHVAINNKGPLIPEEK 318 Query: 315 LPVIFDPF----RGGEREVGRKEGLGLGLFIAQQIVKSHGGSITMSSDDQVQTMVTVRLP 370 L IFDP G G+ +GLGL+I +++ +HGGS+T SS T T+RLP Sbjct: 319 LHTIFDPLVRLVANGGEGSGQGGSMGLGLYIVREVASAHGGSVTASSSTAEGTTFTIRLP 378 Query: 371 R 371 R Sbjct: 379 R 379 >gi|300311807|ref|YP_003775899.1| light-regulated signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 14/226 (6%) Query: 152 RMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKEEVAQKASQQILNGGKRMAKLIDNMLD 211 R E +A LGHDLR+PL A++MAA +++ + S++I + RM +LI +LD Sbjct: 510 RARETLLATLGHDLRDPLQAIMMAARMIEVREHSPSSSNLSKRISSSSSRMHRLISQVLD 569 Query: 212 LARARLAGGIPLVRASACLGEITERVVQEYQATYPGSVVERRIEGDDNG--YWDGDRLGQ 269 ++R + G+ + R + ++ +V E + YP + E +E +D G DGDR+ Q Sbjct: 570 ISRLQSGMGLDIQRRPVDVRKMVSEIVSEARMAYPDN--EIILEAEDCGEIALDGDRISQ 627 Query: 270 VVANLLGNALQHGAADSPICIGIDGRSEEEVVMTIANRG-VIPAALLPVIFDPFR----G 324 VV+NL+ N HG P + I R E+ + + ++N G IP + +F P++ G Sbjct: 628 VVSNLISNTRHHGEIGKPSTL-IVFRREDVLTIAVSNHGPAIPEPVRSNLFKPYKKESLG 686 Query: 325 GEREVGRKEGLGLGLFIAQQIVKSHGGSITMSSDDQVQTMVTVRLP 370 +R GLGLGL+I +IV HGG I +S D+ + T TV LP Sbjct: 687 NQRNT---RGLGLGLYIVSEIVHGHGGKIAVSCDNNIITF-TVTLP 728 >gi|300313030|ref|YP_003777122.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 12 RVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHDVALAFLDVQMPDMDG 71 R + LL DD N+ ++ALL + D E+ +A SGL+A+EL + L +DV MP ++G Sbjct: 15 RPRILLCDDQPINIRLVNALL-KGDYEIFMATSGLQAIELSERVTPDLILMDVNMPGLNG 73 Query: 72 FELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRNK 126 ++ ++ + T +P+IF+T G++ E + K +E G VDF+ KPI +L+ + Sbjct: 74 YDTCARLKQNTLTLGIPVIFLT-GLKSEEDEVKAFEVGGVDFISKPINGTVLKAR 127 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 1/109 (0%) Query: 12 RVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHDVALAFLDVQMPDMDG 71 R L+VDD+ +NL LS L +L+A GL ALE L L LD MP +DG Sbjct: 8 RHVVLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGIDG 67 Query: 72 FELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEP 120 FE I+ R +VP++F+T G+ + +G+E G +D++ KPI P Sbjct: 68 FETCRRIKQVRRVAHVPVVFMT-GLSETEHVVRGFEVGGIDYVTKPIRP 115 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 982,292 Number of extensions: 37864 Number of successful extensions: 293 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 28 Length of query: 372 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 285 Effective length of database: 1,207,925 Effective search space: 344258625 Effective search space used: 344258625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)