BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0127.p (283 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransfe... 543 e-156 gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransf... 73 3e-14 gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransf... 70 3e-13 gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransf... 68 9e-13 gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis... 55 7e-09 >gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransferase chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 543 bits (1398), Expect = e-156, Method: Compositional matrix adjust. Identities = 259/283 (91%), Positives = 276/283 (97%) Query: 1 MDAEINQALANQHFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRFGCETLSQL 60 MDA+INQALAN+HFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRF C+TLSQL Sbjct: 1 MDAQINQALANRHFDIEMQLLLDAIYLKYHCDFRGYAGASLKRRLATAMIRFDCQTLSQL 60 Query: 61 QDKVLHDATVFPALMDYLTVQVSEMFRDPSYFLSLREKVIPLLRTYPSLKIWVAGCSSGE 120 QD+VLHDA VFP LM+YLTVQVSEMFRDPSYFL+LREKV+PLLRTYPSLKIWVAGCSSGE Sbjct: 61 QDRVLHDAAVFPLLMEYLTVQVSEMFRDPSYFLALREKVVPLLRTYPSLKIWVAGCSSGE 120 Query: 121 EVYSLAILLREEGLLDRSIIYATDINQAALKKAEAGVYELDRIPGFTSNHQKSGAKTSLS 180 EVYSLAILLREEGLL+RSIIYATDINQ+ALKKAEAGVY+L+RI GFT+NHQKSGA+TSLS Sbjct: 121 EVYSLAILLREEGLLERSIIYATDINQSALKKAEAGVYDLERIAGFTNNHQKSGARTSLS 180 Query: 181 DYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNRHLQERALGLF 240 DYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNR LQERALGLF Sbjct: 181 DYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNRQLQERALGLF 240 Query: 241 RESLVRKGFLGLGSKESMRFSTHGPAFDEVVREDRIFQKKGEL 283 RESLVRKGFLGLGSKES+RFS+H AF+EVVREDRIFQKKG+L Sbjct: 241 RESLVRKGFLGLGSKESLRFSSHAVAFEEVVREDRIFQKKGDL 283 >gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 22/204 (10%) Query: 67 DATVFPALMDYLTVQVSEMFRDPSYFLSLREKVIPLL----RTYPSLKIWVAGCSSGEEV 122 D L + +TV + R+ F L ++P + R+ ++IW CSSGEE Sbjct: 62 DGKELQLLTNLMTVNETYFLREEYQFQCLVNSMLPEITRNRRSTAPIRIWCIPCSSGEEA 121 Query: 123 YSLAILLREE--GLLDRSI-IYATDINQAALKKAEAGVYE---LDRIPG--FTSNHQKSG 174 Y+LA+ L E G+ + I ++DI+ L+KA+ G Y + +P + + G Sbjct: 122 YTLAMYLMERWPGIDQWDVEIISSDIDTGVLRKAQLGRYSARSVQHVPADWMSKYFLRQG 181 Query: 175 AKTSLSDYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVFAEMHLVSCRNVLIYFNRHLQE 234 + + D A GAV F R N+ S + A + ++ CRN+LIYF+ ++ Sbjct: 182 DEYQICD---ALRGAVEF---TRVNLAKSQDTKA----YRNFDVIFCRNLLIYFDDVSRK 231 Query: 235 RALGLFRESLVRKGFLGLGSKESM 258 A F E+L GF+ LG ESM Sbjct: 232 EAAETFYEALNLNGFICLGHSESM 255 >gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 277 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 14/227 (6%) Query: 39 ASLKRRLATAMIRFGCETLSQLQDKVLHDATV--FPALMDYLTVQVSEMFRDPSYFLSLR 96 A L+ RLA + G L Q + +A +D +T + FR+P +F + Sbjct: 39 ALLQSRLAGRLNELGLRHLGQYHALISSEAGAQERQRAIDLITTNETYFFREPGHFDFVV 98 Query: 97 EKVIPLLRTYPSLKIWVAGCSSGEEVYSLAILLREEGLLDRSIIYATDINQAALKKAEAG 156 + +P L P L+IW A ++GEE Y+LA+LL ++A+DI+ L+ A Sbjct: 99 GQWLPQLAQQPQLRIWSAASATGEEAYTLAMLLDHHRPGASWSVFASDISTRVLRFARRA 158 Query: 157 VYELDRIPGFTSNHQKSGAKTSLSDYYTAAYGAVVFDKSLRKNVVFSDHSLA--TDSVFA 214 +Y + R + + + +Y G + LR V F+ +L + Sbjct: 159 LYPMVRGQNIPRAYLRRYCLMGVGEY----EGHFLVQADLRAKVQFAQRNLTRLDEHDDG 214 Query: 215 EMHLVSCRNVLIYFNRHLQERALGLFRESLVR---KGFLGLGSKESM 258 + L+ RNV+IYF+ E L + R+ + R G+L +G ES+ Sbjct: 215 QYDLIFLRNVIIYFD---CETKLQVLRDVIARLRPGGYLVVGHSESL 258 >gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 67.8 bits (164), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 21/224 (9%) Query: 44 RLATAMIRFGCETLSQLQDKV--LHDATVFPALMDYLTVQVSEMFRDPSYFLSLREKVIP 101 RLA + G + Q D + HD+ + A + LT ++ FR+ +F L + Sbjct: 49 RLARRLRATGITSFQQYLDMLERTHDSEEWEAFTNALTTNLTSFFREAHHFPILAD---- 104 Query: 102 LLRTYP-SLKIWVAGCSSGEEVYSLAILLREE-GLLDRSI-IYATDINQAALKKAEAGVY 158 L+T IW + S+GEE Y++A+ E G L + I ATDI+ L GVY Sbjct: 105 FLKTLKEPATIWCSAASTGEEPYTIAMTACEAYGSLTPPVQIVATDIDTNVLATGSNGVY 164 Query: 159 ELDRIPGFTSNHQKS---GAKTSLSDYYTAAYGAVVFDKSLRKNVVFSDHSLATD--SVF 213 ++RI + K K S Y V LRK + F +L D + Sbjct: 165 PMERIEKMSPERVKKFFLRGKGSHEGY-------VRVRPELRKLITFKQLNLLADGWPLS 217 Query: 214 AEMHLVSCRNVLIYFNRHLQERALGLFRESLVRKGFLGLGSKES 257 + ++ CRNV+IYF++ Q + L F + L G E+ Sbjct: 218 GQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKPHALLFAGHSEN 261 >gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis proteins protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 16/192 (8%) Query: 73 ALMDYLTVQVSEMFRDPSYFLSLREKVIPLLRTYPS--LKIWVAGCSSGEEVYSLAILLR 130 AL++ V + FRD L++ L P+ ++I CS+GEE YSLA+ L Sbjct: 59 ALIELAVVPETWFFRDREAILAVARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALL 118 Query: 131 EEGLLDRS-IIYATDINQAALKKAEAGVYELDRIPGFTSNHQKSGAKTSLSD-YYTAAYG 188 + GL +I A DI +L+ A AG+Y + G + + D ++ G Sbjct: 119 DAGLTPGQFVIDAYDIRTRSLEIAAAGLY---------GRNSFRGQELAFRDRHFDLEQG 169 Query: 189 AVVFDKSLRKNVVFSDHSLATDSVFAEMH---LVSCRNVLIYFNRHLQERALGLFRESLV 245 + +R V F+ +L + CRNVLIYF R +Q + + L + Sbjct: 170 QWRLHERIRSQVRFAPGNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMK 229 Query: 246 RKGFLGLGSKES 257 + +G E Sbjct: 230 PDALIFVGPAEG 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 784,496 Number of extensions: 28922 Number of successful extensions: 64 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 5 Length of query: 283 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 199 Effective length of database: 1,222,130 Effective search space: 243203870 Effective search space used: 243203870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)