BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0124.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312678|ref|YP_003776770.1| transmembrane protein [Herbaspi...   379   e-106

>gi|300312678|ref|YP_003776770.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/219 (84%), Positives = 202/219 (92%), Gaps = 1/219 (0%)

Query: 1   MSVARHIVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRAD 60
           MSVAR IVQVHPRLLIG+A+GI AA  LPA+TW GR L+GWNAGVWFYLLSLW+MMLRAD
Sbjct: 1   MSVARQIVQVHPRLLIGLAVGIVAAVFLPATTWTGRCLVGWNAGVWFYLLSLWLMMLRAD 60

Query: 61  AKAVKRLAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVF 120
           A+AV+RLAETEDESA VVLVMVCVAA+ASLLAILLEL G+SH D R +LLRYAFTASTVF
Sbjct: 61  AEAVRRLAETEDESAQVVLVMVCVAAVASLLAILLELAGNSHGD-RSKLLRYAFTASTVF 119

Query: 121 GSWALIGTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDV 180
           G+W LIGTIFTLHYARLFYA+DDDP+ALPLRFPDG R P YWDFLYF+FTISVAVQTSDV
Sbjct: 120 GAWLLIGTIFTLHYARLFYAEDDDPQALPLRFPDGQRQPDYWDFLYFSFTISVAVQTSDV 179

Query: 181 AVASRALRKSVLAHSLICFVFNAAIIGLSINIAAGLAGT 219
            VA+RALRK+VLAHSLICFVFNAAIIGLSINIAAGLAG 
Sbjct: 180 GVATRALRKTVLAHSLICFVFNAAIIGLSINIAAGLAGN 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 601,693
Number of extensions: 20831
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)