BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0121.p (481 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 866 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 208 6e-55 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 186 3e-48 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 169 5e-43 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 165 8e-42 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/451 (92%), Positives = 439/451 (97%) Query: 30 HASIRRDLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER 89 H+SIRRDLLKWLIAPLLL+NL+GAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER Sbjct: 5 HSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER 64 Query: 90 TTAELTQQAEQILRSNHSDTTFFAVRNSQGEILVGDKGFPQLPESEIFDRPFNYDGEMRG 149 TTAELTQQAEQILRSNHSDTTFFAVRN++G+I+VGDKGFPQLP S++FDRP NYDGEMRG Sbjct: 65 TTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMRG 124 Query: 150 EPVRISAMQVRVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRR 209 EPVRI+AMQVRVKNGVI VAVAETIRKRDRAHYTILLSFL+LDG LTF S+ VVL+AVRR Sbjct: 125 EPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRR 184 Query: 210 GLRPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQQNFMADV 269 GLRPLKSLQRNLEQR HGKLGAIDG GAPVELQPLIVAMNELMARI+KGEQAQQNFMADV Sbjct: 185 GLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADV 244 Query: 270 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF 329 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF Sbjct: 245 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF 304 Query: 330 ESRKLEELSLHKLVEESVQHFIEEADKKHIDLGFDLQPARLRGDRFLLADLIDNLIDNAV 389 ESRKLEELSL KLVEESVQHFIEEADKK IDLGFDL+PARLRGDRFLL+DLIDNLIDNAV Sbjct: 305 ESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNAV 364 Query: 390 RYSPLHGTVTVRCLEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAGSGLGLAIV 449 RYSP HGTVTVRCLEE+ ATVLSVEDSGPGIAPEHRELIFDR+YRANDK+AGSGLGLAIV Sbjct: 365 RYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIV 424 Query: 450 REIAHDHGGVITVDCKEQGQGTIFTVRFPLA 480 REIAHDHGGVI+VDCKEQGQGTIFTVRFPLA Sbjct: 425 REIAHDHGGVISVDCKEQGQGTIFTVRFPLA 455 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 208 bits (530), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 158/469 (33%), Positives = 235/469 (50%), Gaps = 24/469 (5%) Query: 32 SIRRDLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 91 S+R L++WL+ PL LL V A Y+ A A A+D++L+ ST L +V T Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 92 AELTQQAEQILRSNHSDTTFFAVRNSQGEILVGDKGFPQLP----ESEIFDRPFN-YDGE 146 A++ A +++ ++ V GE++ G P +P SE++ Y + Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 147 MRGEPVRISAMQVRVKN----GVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSV 202 +PVRI+A+ V + G+ + V ET+ R+ IL L G L + + Sbjct: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 Query: 203 VLIAVRRGLRPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQ 262 V AVR LRPL L+ +E R L D E++PL+ AMN M R+ AQ Sbjct: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 Query: 263 QNFMADVAHQLRTPLTGLKLQLEL-LHDKHQDQPDTA--RSLAM-MNSSVERMIRQSRQL 318 + F+AD +HQLRTPLT LK Q EL L + ++Q D A R L M + + + + +L Sbjct: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 Query: 319 LALARSEPGLFESRKLEELSLHKLVEESVQHFIEEADKKHIDLGFDLQ-PARLRGDRFLL 377 L LAR+E G E + LSL + ++A + I L F+ + + + LL Sbjct: 310 LTLARAEHGAAEGGTM-PLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLL 368 Query: 378 ADLIDNLIDNAVRYSPLHGTVTVRCLEEEG-----ATVLSVEDSGPGIAPEHRELIFDRY 432 +L+ NL+DNA+RY+P G VT+R + +L VEDSGPGI RE +F+ + Sbjct: 369 HELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKVFEPF 428 Query: 433 YRAND----KIAGSGLGLAIVREIAHDHGGVITVDCKEQGQGTIFTVRF 477 YRA G+GLGL+IVREIA H +T+D QG G + + F Sbjct: 429 YRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVF 477 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 186 bits (473), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 192/356 (53%), Gaps = 26/356 (7%) Query: 147 MRGEPVRISAMQVRVKNG-----------VISVAVAETIRKRDRAHYTILLSFLLLDGGL 195 + G VRI+ +QV ++ + +V V ET+ KR + I+ +L + Sbjct: 23 LHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLEKRAQLANEIIKGVILPQFII 82 Query: 196 TFGSLSVVLIAVRRGLRPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARI 255 +L++V A+ RGL PL LQ+ + R L ID P E+ PL+ ++N+++AR+ Sbjct: 83 LPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARL 142 Query: 256 SKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQS 315 S+ Q+ F+AD AHQ++TPL G+++Q EL + DQ D RSL + S E R Sbjct: 143 SQTIAIQKRFIADAAHQMKTPLAGMRMQSELAL-RQDDQVDVRRSLEQLAKSSETATRLV 201 Query: 316 RQLLALARSEPGLFESRKLEELSLHKLVEESVQHFIEEADKKHIDLGFDL--QPARLRGD 373 QLL+LAR+E +S + + L++L VQ ++ + + IDLGF+ P + G+ Sbjct: 202 NQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITGN 261 Query: 374 RFLLADLIDNLIDNAVRYSPL--HGTVTVRCLEEEGA--TVLSVEDSGPGIAPEHRELIF 429 +L +L+ NL+DNA+ Y+P +G VTVR +EG +L VED+GPGI R +F Sbjct: 262 PVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANVF 321 Query: 430 DRYYR---ANDKIAGSGLGLAIVREIAHDHGGVITVDCKEQGQ-----GTIFTVRF 477 +R+YR +G GLGLAIVREIA H + + + G +F V F Sbjct: 322 ERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSNPRSTDPKYPGCVFRVSF 377 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 130/425 (30%), Positives = 211/425 (49%), Gaps = 25/425 (5%) Query: 69 DQNLMDSTWGLYAQVRHRQERTTAELTQQAEQILRSNHSDTTFFAVRNSQGEILVGDKGF 128 D+ L+ S + QV + A ++ S D ++ V +L G F Sbjct: 41 DRALLASARMIAGQVGWNDGAPVVSVPPAALELFASPAQDAVYYQVLMDDDTLLAGRPDF 100 Query: 129 PQLPESEIFDRPFNYDGEMRGEPVRI-SAMQVRVKNG---VISVAVAETIRKR-----DR 179 P P+ P G+P+R+ S ++ G +++V+V +T++ R D+ Sbjct: 101 PAAPDFAAL-YPVYSTTSFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQ 159 Query: 180 AHYTILLSFLLLDGGLTFGSLSVVLIAVRRGLRPLKSLQRNLEQRGHGKLGAIDGIGAPV 239 H ++ +LL ++S+V++ + LRPL +L+ L R L + G Sbjct: 160 WHASLRRQIVLL-----LLAISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQ 214 Query: 240 ELQPLIVAMNELMARISKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTAR 299 EL+P++ A+N+ + R++ Q+ F+AD AHQLRTPL + Q++ + D A+ Sbjct: 215 ELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVIDSQIQFAR-QLDDPARVAQ 273 Query: 300 SLAMMNSSVERMIRQSRQLLALARSE---PGLFESRKLEELSLHKLVEESVQHFIEEADK 356 LA + M + +LL L+++E F ++ L++ +V E + A K Sbjct: 274 VLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGL---ALK 330 Query: 357 KHIDLGFD--LQPARLRGDRFLLADLIDNLIDNAVRYSPLHGTVTVRCLEEEGATVLSVE 414 K IDLG + L+ A + G+ L ++ NLIDNA+RY+P G VTV ++ +++V Sbjct: 331 KGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVS 390 Query: 415 DSGPGIAPEHRELIFDRYYR-ANDKIAGSGLGLAIVREIAHDHGGVITVDCKEQGQGTIF 473 D+GPGI E RE +F+R+YR A GSGLGLAIVREI G I +D QG G + Sbjct: 391 DNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQASQGSIRLDAPAQGSGLVA 450 Query: 474 TVRFP 478 TV P Sbjct: 451 TVSLP 455 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 165 bits (417), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 172/335 (51%), Gaps = 22/335 (6%) Query: 160 RVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRRGLRPLKSLQR 219 ++ + V+ VA ++ R A + LL G LS +AV RGL P++ Sbjct: 116 QIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLS--WVAVSRGLAPVRKAAA 173 Query: 220 NLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQQNFMADVAHQLRTPLTG 279 + R L + +G P E+QPL A+N+L+AR+ + Q+ F+AD AH+LRTPLT Sbjct: 174 EVAARDMNSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTA 233 Query: 280 LKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSL 339 L+LQ +L ++ D+ + + A + + +ER QLL LAR EP ++ ++ L Sbjct: 234 LRLQTQLA-ERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQEP---DAMSFTQVDL 289 Query: 340 HKLVEESVQHFIEEADKKHIDLGF-----DLQPARLRGDRFLLADLIDNLIDNAVRYSPL 394 L+ V A+ IDLG D +P R+ G+ L L +NL+DNA+RY+P Sbjct: 290 RALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRYTPA 349 Query: 395 HGTVTVRC-LEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDK--------IAGSGLG 445 G V V L G + V+DSGPGIA +FDR+YRA GSGLG Sbjct: 350 GGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFGSGLG 409 Query: 446 LAIVREIAHDHGGVITVDCKEQGQGTIFTVRFPLA 480 LAIVR+IA H + V+ + G G V FPL+ Sbjct: 410 LAIVRQIADLH--RVPVELRNTGHGLQARVVFPLS 442 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,298,337 Number of extensions: 49466 Number of successful extensions: 300 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 42 Length of query: 481 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 392 Effective length of database: 1,198,455 Effective search space: 469794360 Effective search space used: 469794360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)