BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0120.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312680|ref|YP_003776772.1| two component response regulato... 437 e-124 gi|300309981|ref|YP_003774073.1| two component response regulato... 203 7e-54 gi|300313818|ref|YP_003777910.1| two component transcription reg... 168 4e-43 gi|300312688|ref|YP_003776780.1| response regulator consisting o... 164 7e-42 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 162 2e-41 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 437 bits (1124), Expect = e-124, Method: Compositional matrix adjust. Identities = 217/219 (99%), Positives = 217/219 (99%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV 60 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV 60 Query: 61 LRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ 120 LRRMRA GNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ Sbjct: 61 LRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ 120 Query: 121 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 180 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE Sbjct: 121 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 180 Query: 181 DFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKSE 219 DFTINAVEVYVSRIRLKIADSGV IRTIRGFGYMLEKSE Sbjct: 181 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSE 219 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 203 bits (517), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 7/222 (3%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 M +LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFD--LLILDLGLPKMS 58 Query: 57 GFEVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G EVLRR+RA + PVL+LTA D++ RV GL+LGADDY+ KPFA EL AR++AL RR Sbjct: 59 GLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRR 118 Query: 117 SA-PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 A P + G LS D + A I + +ELS RE +LE L+Q R+VSK+Q++D + Sbjct: 119 GAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHL 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 WGE+ + NA+EVYV R+R KI GV I T+RG GY LEK Sbjct: 179 CEWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 168 bits (425), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 138/226 (61%), Gaps = 10/226 (4%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGID 56 M +LLVED L+ L++ + TV +NG DA L+Q + A+++LD+ LP +D Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDY--ALVILDLTLPRMD 58 Query: 57 GFEVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 G EVL+RMRA GN TPVL+LTAR + DRV GL +GADDYL KPF EL AR+KAL+RR Sbjct: 59 GMEVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRR 118 Query: 117 SAPQPA-QLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 S A ++ G LS D ++ G + L+ RE VLE L+ V K+++ V Sbjct: 119 SQNNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQV 178 Query: 176 LPWGEDFTINAVEVYVSRIRLKIADSG---VVIRTIRGFGYMLEKS 218 ++ +++A+E+Y+ R+R K+ G V I T+RG GY+L+ + Sbjct: 179 FTLEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQAT 224 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 164 bits (414), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 133/222 (59%), Gaps = 3/222 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGN--DALSQRFNAAVLVLDIGLPGIDGF 58 M +LL+ED+P L L ++L H F V +G D + + N V++LD+ LP + G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 VLRR+R N PV++LTA +I ++V L GADDYLVKPF ELVARIK L+RR Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 119 P-QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 P + A++ G L D+ T++ + G + L RE VLE L+ + VSK ++ V Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKSE 219 E+ + +A+EVY+SR+R K+ SG I T+RG GY+L + + Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 139/219 (63%), Gaps = 6/219 (2%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA---LSQRFNAAVLVLDIGLPGIDG 57 M +LLVED + + + LN G TV +NG A LS+ ++ +L+LD+ LP DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESYD--LLILDVMLPQQDG 58 Query: 58 FEVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRS 117 F +L+++R G++TPVL+LTA + +RV L+LGADDYLVKPF EL ARI+ L+RRS Sbjct: 59 FSLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRS 118 Query: 118 APQPAQ-LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVL 176 + L LS+D ++ A +DG+ IEL+ RE T+LE + R+ +K +++D + Sbjct: 119 GGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLF 178 Query: 177 PWGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYML 215 ++ + N+VE YV+R+R K+A + IRT+RG GY L Sbjct: 179 TVDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQL 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 694,177 Number of extensions: 28980 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 41 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)