BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0114.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A... 397 e-112 gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A... 310 8e-86 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 132 3e-32 >gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 397 bits (1019), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/206 (92%), Positives = 198/206 (96%) Query: 62 DVELXTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTT 121 D + TLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTT Sbjct: 132 DAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTT 191 Query: 122 EPTASLLLKTGDAQVLVDMRTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFV 181 EPTAS LLKTGDAQVLVD+RTVEGTVKALGGLYPASSVYVQRSWLNSHKE+AQKLARAFV Sbjct: 192 EPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKEDAQKLARAFV 251 Query: 182 KTLKFINTHTAEQIAEKMPKDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLS 241 KTL+FI THTAEQIA+KMPKDYYG+NK LYIQAL NSLPMYS DGKMPKGGP+TVLAVLS Sbjct: 252 KTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLPMYSQDGKMPKGGPQTVLAVLS 311 Query: 242 GFNPNVKGKHVDLSKTYTDEFVNAVK 267 GFNPNVKGKHVDLSKTYTDEFVNAVK Sbjct: 312 GFNPNVKGKHVDLSKTYTDEFVNAVK 337 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/67 (77%), Positives = 60/67 (89%) Query: 1 VNKNLRRGLLSLAVAGTMLAALPIHAVAAAKVTIMVGGINKMVYLPAKLAEQLGYFKEEG 60 +NK++R+GLLSLA+A T+LA P A AAAK+TIMVGGINKMVYLPAKLAEQLGYFKEEG Sbjct: 1 MNKHIRQGLLSLAIASTVLAGAPAPAWAAAKITIMVGGINKMVYLPAKLAEQLGYFKEEG 60 Query: 61 LDVELXT 67 LDVEL + Sbjct: 61 LDVELQS 67 >gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 310 bits (794), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 142/206 (68%), Positives = 175/206 (84%) Query: 62 DVELXTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTT 121 D++ TLGVTGLGSS++F+ QYLA+R G+ + +S+LPVGA NT IAAMKQ R+D TT Sbjct: 148 DLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWTT 207 Query: 122 EPTASLLLKTGDAQVLVDMRTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFV 181 EPT S+LL +G A+VLVDM +V+GT ALGGLYPASS+YV RSW+NSHK E+QKLAR FV Sbjct: 208 EPTTSILLASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRSWMNSHKAESQKLARVFV 267 Query: 182 KTLKFINTHTAEQIAEKMPKDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLS 241 KTL++I TH+AE IA+KMPKDYYG +KA+Y+QAL SLPMYSPDGKMP GGPE VL V++ Sbjct: 268 KTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLPMYSPDGKMPAGGPEQVLKVMA 327 Query: 242 GFNPNVKGKHVDLSKTYTDEFVNAVK 267 GFNPN+KGK++DLSKTYT+EFV+ VK Sbjct: 328 GFNPNIKGKNIDLSKTYTNEFVDQVK 353 Score = 71.2 bits (173), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/58 (60%), Positives = 41/58 (70%) Query: 10 LSLAVAGTMLAALPIHAVAAAKVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELXT 67 +S A+ L A AA K+ IMVGGINK++YLP KLAE LGYFKEEGLDVEL + Sbjct: 26 VSTAITACALGLAAPQARAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVELQS 83 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 112/203 (55%) Query: 62 DVELXTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTT 121 D++ +GVT GSST+ + Y+ ++ G+ S + VGA I+A++ G+IDA Sbjct: 136 DLKGKKIGVTAPGSSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANL 195 Query: 122 EPTASLLLKTGDAQVLVDMRTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFV 181 +P S+L ++ + + + D RT++ T GG PA+++Y +++ + Q L A V Sbjct: 196 DPVISMLEQSKEIKTIADTRTLKDTNDVFGGPMPAATLYAPAAFIQKYPNTTQALTNAMV 255 Query: 182 KTLKFINTHTAEQIAEKMPKDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLS 241 + LK+I I + +P+ Y +++LYI A SPDG P GGP+T L L Sbjct: 256 RALKWIQKAGPSDIIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFPPGGPDTALRTLK 315 Query: 242 GFNPNVKGKHVDLSKTYTDEFVN 264 F P++ K +DLSKT+T+ FV Sbjct: 316 AFEPSLADKQIDLSKTFTNSFVQ 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 750,139 Number of extensions: 29081 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 5 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)