BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0113.p (333 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate A... 609 e-176 gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate A... 453 e-129 gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate A... 201 6e-53 >gi|300312687|ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 609 bits (1571), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/327 (92%), Positives = 313/327 (95%), Gaps = 6/327 (1%) Query: 13 ATAIAACALGLGAPQAHAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVELX---- 68 +TAI ACALGL APQA AADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVEL Sbjct: 27 STAITACALGLAAPQARAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVELQSQPA 86 Query: 69 --DAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSITQLLLVPGGMEMVRADLADSVRSM 126 DAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSI QLLLVPGGMEMVRADLADSVRSM Sbjct: 87 GVDAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSIAQLLLVPGGMEMVRADLADSVRSM 146 Query: 127 ADLKGKTLGVTGLGSSSSFLAQYLASRAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWT 186 ADLKGKTLGVTGLGSSSSF+AQYLA+RAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWT Sbjct: 147 ADLKGKTLGVTGLGSSSSFIAQYLANRAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWT 206 Query: 187 TEPTTSILLASGAAKVLVDMSSVEGTKAALGGLYPASSLYVHRSWMVSHKADAQKLARAF 246 TEPTTSILLASGAAKVLVDMSSV+GTKAALGGLYPASSLYVHRSWM SHKA++QKLAR F Sbjct: 207 TEPTTSILLASGAAKVLVDMSSVDGTKAALGGLYPASSLYVHRSWMNSHKAESQKLARVF 266 Query: 247 VKTLKYIQTHSAEEVADKMPKDYYGGNKAIYVQALKASLPMYSPDGKMPAGGPEQVLKVM 306 VKTL+YIQTHSAE++ADKMPKDYYGG+KAIYVQALKASLPMYSPDGKMPAGGPEQVLKVM Sbjct: 267 VKTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLPMYSPDGKMPAGGPEQVLKVM 326 Query: 307 AGFNPNIKGKNIDLSKTYTNEFVDAVK 333 AGFNPNIKGKNIDLSKTYTNEFVD VK Sbjct: 327 AGFNPNIKGKNIDLSKTYTNEFVDQVK 353 >gi|300312686|ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 228/336 (67%), Positives = 269/336 (80%), Gaps = 9/336 (2%) Query: 4 LRRRLRTLGATAIAACALGLGAPQAHAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGL 63 +R+ L +L AIA+ L A AA KI IMVGGINK++YLP KLAE LGYFKEEGL Sbjct: 5 IRQGLLSL---AIASTVLAGAPAPAWAAAKITIMVGGINKMVYLPAKLAEQLGYFKEEGL 61 Query: 64 DVELX------DAENELLAGAVQAVVGYYDHSIDLQSKGKEVTSITQLLLVPGGMEMVRA 117 DVEL DAENELLAGAVQAVVG+YDHSIDLQ+KGKE+T+I L VPG +E+V Sbjct: 62 DVELQSQPAGVDAENELLAGAVQAVVGFYDHSIDLQTKGKEITAIVILGQVPGEVELVST 121 Query: 118 DLADSVRSMADLKGKTLGVTGLGSSSSFLAQYLASRAGLKAGDYSILPVGAGNTLIAAMK 177 A +SMAD KGKTLGVTGLGSS++FL QYLASR G+ + +S+LPVGA NT IAAMK Sbjct: 122 KAAPHFQSMADAKGKTLGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMK 181 Query: 178 QKRVDVAWTTEPTTSILLASGAAKVLVDMSSVEGTKAALGGLYPASSLYVHRSWMVSHKA 237 Q R+D TTEPT S LL +G A+VLVD+ +VEGT ALGGLYPASS+YV RSW+ SHK Sbjct: 182 QGRIDAGMTTEPTASQLLKTGDAQVLVDLRTVEGTVKALGGLYPASSVYVQRSWLNSHKE 241 Query: 238 DAQKLARAFVKTLKYIQTHSAEEVADKMPKDYYGGNKAIYVQALKASLPMYSPDGKMPAG 297 DAQKLARAFVKTL++IQTH+AE++ADKMPKDYYG NK +Y+QAL SLPMYS DGKMP G Sbjct: 242 DAQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLPMYSQDGKMPKG 301 Query: 298 GPEQVLKVMAGFNPNIKGKNIDLSKTYTNEFVDAVK 333 GP+ VL V++GFNPN+KGK++DLSKTYT+EFV+AVK Sbjct: 302 GPQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 337 >gi|300312970|ref|YP_003777062.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 201 bits (512), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 6/309 (1%) Query: 27 QAHAADKIIIMVGGINKLIYLPPKLAESLGYFKEEGLDVELXD------AENELLAGAVQ 80 QA K+ I VGG N YLP +AE LGYFK+EGL VE+ D A ++ G+ Sbjct: 29 QALEKPKVSIAVGGKNLFYYLPLTIAEQLGYFKDEGLQVEISDFAGGAKALQAMVGGSAD 88 Query: 81 AVVGYYDHSIDLQSKGKEVTSITQLLLVPGGMEMVRADLADSVRSMADLKGKTLGVTGLG 140 V G Y+H+I++Q+K + + + P + V + +++ADLKGK +GVT G Sbjct: 89 VVSGAYEHTINMQAKNQPIVAFVLQGRAPQIVLAVNNKTMPNYKTVADLKGKKIGVTAPG 148 Query: 141 SSSSFLAQYLASRAGLKAGDYSILPVGAGNTLIAAMKQKRVDVAWTTEPTTSILLASGAA 200 SS+S +A Y+ ++AGLK D S + VGA I+A++ ++D +P S+L S Sbjct: 149 SSTSVMASYVLAKAGLKPSDVSFIGVGAAAGAISAVRSGQIDAIANLDPVISMLEQSKEI 208 Query: 201 KVLVDMSSVEGTKAALGGLYPASSLYVHRSWMVSHKADAQKLARAFVKTLKYIQTHSAEE 260 K + D +++ T GG PA++LY +++ + Q L A V+ LK+IQ + Sbjct: 209 KTIADTRTLKDTNDVFGGPMPAATLYAPAAFIQKYPNTTQALTNAMVRALKWIQKAGPSD 268 Query: 261 VADKMPKDYYGGNKAIYVQALKASLPMYSPDGKMPAGGPEQVLKVMAGFNPNIKGKNIDL 320 + +P+ Y G++++Y+ A SPDG P GGP+ L+ + F P++ K IDL Sbjct: 269 IIKAVPESYLLGDRSLYIDAFMKVRQAISPDGYFPPGGPDTALRTLKAFEPSLADKQIDL 328 Query: 321 SKTYTNEFV 329 SKT+TN FV Sbjct: 329 SKTFTNSFV 337 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 921,172 Number of extensions: 35012 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 4 Length of query: 333 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 247 Effective length of database: 1,212,660 Effective search space: 299527020 Effective search space used: 299527020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)