BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0104.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 361 e-101 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 136 1e-33 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 126 2e-30 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 120 1e-28 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 116 1e-27 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/234 (78%), Positives = 193/234 (82%) Query: 1 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAA 60 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQ G+IVQAGSPAELYRYPR LFAA Sbjct: 173 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAA 232 Query: 61 GFIGTPAMNFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAG 120 GFIGTPAMNFL G V+R L + QRW L ERFSRL M+VKLAVRPD+VR+AG Sbjct: 233 GFIGTPAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAG 292 Query: 121 EQDAAHSLTCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHAL 180 E++ A SLTC V VELVEILGADALLTTR G QTLTALV A LPQ G L LA DQH L Sbjct: 293 EREPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHEL 352 Query: 181 HVFDVHSGENLSLPPAAFAAGGQDDGPHGKETKHESGSGAGPYPPGRIVQGVGA 234 HVFDV SGENLSLP AA A G DDGPHGKETKHESGSGAGPYPPG IVQG+GA Sbjct: 353 HVFDVESGENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA 406 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 18/199 (9%) Query: 1 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAA 60 +R +IK LHQRL+TT++YVTHDQ+EAMT+AD++++M+ G + Q G P +LY YP LF A Sbjct: 172 MRTEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVA 231 Query: 61 GFIGTPAMNFLDGVVERDGATLSVRCEDQRWI-------LQDERFSRLMPGMSVKLAVRP 113 GFIG+PAMNF+ + R+ V D + LQ G V VRP Sbjct: 232 GFIGSPAMNFIPATLRRNATGAEVEFADGTRVPAPYGAALQGN------DGQKVTYGVRP 285 Query: 114 DYVRMAGEQDAAHSLTCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHL 173 +++ + A A V +VE GAD + +R+G +LT++ +H AG +HL Sbjct: 286 EHLSI-----GAAGQGIATKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHL 340 Query: 174 AFDQHALHVFDVHSGENLS 192 D H+FD SG++L+ Sbjct: 341 VPDHSRTHLFDAESGKSLA 359 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/187 (41%), Positives = 107/187 (57%), Gaps = 3/187 (1%) Query: 1 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAA 60 +R +I++LH LRTT++YVTHDQ+EAMTL R+I+M G Q G+PAE+Y P T F A Sbjct: 176 MRLEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVA 235 Query: 61 GFIGTPAMNFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAG 120 FIG+P MN L G + DGA+ V + IL+ + G L VRP+++ Sbjct: 236 SFIGSPPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPIL 295 Query: 121 EQDAAHSLTCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHAL 180 + AA +++VELVE LGA+ L+ R G Q L A + GQR+ +F + Sbjct: 296 DGSAAQ---LSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDV 352 Query: 181 HVFDVHS 187 H FDV S Sbjct: 353 HWFDVKS 359 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/186 (40%), Positives = 104/186 (55%), Gaps = 8/186 (4%) Query: 2 RGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAG 61 R +I +LH++L T VYVTHDQ+EAMTL D++++M G+I QAG+P ELY+ P+ LF AG Sbjct: 174 RLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAG 233 Query: 62 FIGTPAMNFLDGVVER-DGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMA- 119 FIG+P MNF GVV R D + + V +L D + PG +V L +R + +R Sbjct: 234 FIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGL 293 Query: 120 GEQDAAHSLTCAVDVELVEILG-ADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQH 178 G+ H + V LVE LG A+ L T G + GQ + L+ H Sbjct: 294 GDGQPLHGV-----VNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSH 348 Query: 179 ALHVFD 184 A H+FD Sbjct: 349 AFHLFD 354 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 14/188 (7%) Query: 1 LRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAA 60 +R +I+ L Q+L T VYVTHDQ EAM++AD+VIL++ G+I Q +PA+LY P T FAA Sbjct: 172 MRREIRALQQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAA 231 Query: 61 GFIGTPAMNFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAG 120 FIGTP MN L +G +S IL+D + +L +RP+++R+A Sbjct: 232 RFIGTPPMNLLPLEPHAEGLVIS----GSDVILRD------LGQTPWQLGLRPEHIRLA- 280 Query: 121 EQDAAHSLTCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHAL 180 DA+ S AV VE VE GAD ++ R GA +L QH AG + LA+D Sbjct: 281 --DASDSSVPAV-VETVEYFGADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQ 337 Query: 181 HVFDVHSG 188 + FD SG Sbjct: 338 YFFDPASG 345 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 845,848 Number of extensions: 37295 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 15 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)